deLaatLab / pipe4C
4C-seq processing pipeline
☆22Updated 7 months ago
Related projects ⓘ
Alternatives and complementary repositories for pipe4C
- A Perl/R pipeline for plotting metagenes☆35Updated 3 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆36Updated 2 years ago
- A package for quantifying transposable elements at a locus level for RNAseq datasets.☆24Updated 2 months ago
- Estimate the cis-regulatory activity of transposable element (TEs) subfamilies☆10Updated 11 months ago
- ☆35Updated 5 years ago
- ☆24Updated 2 years ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆43Updated 2 years ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆26Updated 5 years ago
- Long-read Isoform Quantification and Analysis☆39Updated 3 months ago
- Tutorial Website☆53Updated 3 years ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆64Updated 5 years ago
- ☆16Updated 3 months ago
- ☆13Updated last year
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 4 years ago
- Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.☆24Updated 5 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆44Updated 5 years ago
- Pipeline for functional annotation of genomes by integrating data from RNA-seq, ChIP-seq, DNase-seq, etc.☆22Updated 2 years ago
- ENCODE long read RNA-seq pipeline☆44Updated last year
- an R/Shiny application for interactive creation of non-circular plots of whole genomes☆45Updated last year
- ☆16Updated 4 years ago
- A Python implementation of the original DI domain caller☆13Updated 4 years ago
- Pipeline to identify isoforms from full-length cDNA sequencing data☆22Updated 6 months ago
- ☆24Updated last month
- Peak calling for 4C data☆12Updated 6 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆40Updated last year
- Genomic Association Tester☆29Updated last year
- ☆21Updated 2 weeks ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆40Updated 2 years ago
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆32Updated 3 years ago