deLaatLab / pipe4CLinks
4C-seq processing pipeline
☆26Updated 10 months ago
Alternatives and similar repositories for pipe4C
Users that are interested in pipe4C are comparing it to the libraries listed below
Sorting:
- CALDER is a Hi-C analysis tool that allows: (1) compute chromatin domains from whole chromosome contacts; (2) derive their non-linear hie…☆26Updated 9 months ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆67Updated 6 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆50Updated 6 years ago
- A Python implementation for BH-FDR and HiCCUPS☆53Updated last month
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Updated 3 years ago
- A Perl/R pipeline for plotting metagenes☆37Updated 4 years ago
- ☆22Updated 2 years ago
- Genomic Association Tester☆35Updated 2 years ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆49Updated 3 years ago
- HiC for copy Number variation and Translocation detection☆41Updated 4 years ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆45Updated 3 years ago
- A Python implementation of the original DI domain caller☆12Updated 5 years ago
- ☆12Updated 6 years ago
- code associated with crane-nature-2015, 10.1038/nature14450☆36Updated 10 years ago
- ☆37Updated 6 years ago
- A fast and efficient tool for converting chromatin interaction data between genome assemblies☆77Updated 6 months ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆64Updated last year
- Tutorial Website☆63Updated 5 years ago
- scripts for analyzing the CVDC data.☆20Updated 6 years ago
- ENCODE long read RNA-seq pipeline☆51Updated 3 years ago
- Allele-specific alignment sorting☆61Updated 3 years ago
- dcHiC: Differential compartment analysis for Hi-C datasets☆74Updated 2 years ago
- Enhanced version of the FastQTL QTL mapper☆71Updated 2 years ago
- Statistically Significant loops from HiChIP data☆46Updated last year
- SingleCell Nanopore sequencing data analysis☆63Updated 8 months ago
- ☆23Updated 2 years ago
- TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data☆27Updated 2 years ago
- IDR☆30Updated 2 years ago
- A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes☆75Updated 2 years ago
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆21Updated 2 years ago