A tool for timing complex copy number gains in cancer.
☆20Dec 4, 2025Updated 4 months ago
Alternatives and similar repositories for gritic
Users that are interested in gritic are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Search for activating regulatory variants in the tumor genome☆14Apr 11, 2025Updated last year
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆22Dec 14, 2021Updated 4 years ago
- Code accompanying The Evolutionary history of 2,658 cancers☆47Apr 16, 2021Updated 5 years ago
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆13Jan 24, 2023Updated 3 years ago
- A computational method for inferring the cancer cell fraction of tumour structural variation from whole-genome sequencing data.☆42Aug 21, 2025Updated 7 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Code accompanying "The evolutionary history of 2,658 cancers", Nature 578, 122–128 (2020)☆17Jan 15, 2020Updated 6 years ago
- ☆12Nov 6, 2023Updated 2 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆32Feb 18, 2026Updated last month
- Battenberg R package for subclonal copynumber estimation☆95Feb 20, 2026Updated last month
- Structural Variant Prediction Viewer☆35Jul 19, 2017Updated 8 years ago
- ☆85Apr 17, 2025Updated 11 months ago
- Decrypting somatic mutation patterns to reveal the evolution of cancer☆57Mar 10, 2021Updated 5 years ago
- An R package to time somatic mutations☆69Dec 12, 2020Updated 5 years ago
- ☆24Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Hemang Parikh☆11Jan 12, 2016Updated 10 years ago
- ☆78Jul 12, 2023Updated 2 years ago
- SigProfilerPlotting provides a standard tool for displaying all types of mutational signatures as well as all types of mutational pattern…☆52Feb 8, 2026Updated 2 months ago
- A framework to infer mutational signatures in cancer over time☆57Jul 9, 2019Updated 6 years ago
- Import and run CWL workflows on DNAnexus (alpha)☆13Sep 12, 2018Updated 7 years ago
- ☆21Aug 11, 2021Updated 4 years ago
- An R package to plot maps of clone distributions in somatic evolution☆20Jan 8, 2024Updated 2 years ago
- A novel management, annotation, and machine learning framework for analyzing cancer mutations☆31Jul 4, 2024Updated last year
- Fast Structural Variation Detection Toolbox☆19Feb 16, 2015Updated 11 years ago
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- An R package to interpret biological trends from DNA methylation data☆18May 24, 2022Updated 3 years ago
- An Expectation-Maximization algorithm to infer mutational signatures☆27Nov 16, 2016Updated 9 years ago
- Superseded by https://github.com/MD-Anderson-Bioinformatics/BatchEffectsPackage☆12Aug 13, 2020Updated 5 years ago
- ☆29Sep 11, 2025Updated 7 months ago
- FInding REliable Variants without ArTifacts☆23Nov 18, 2022Updated 3 years ago
- A comprehensive pipeline to analyze and visualize structural variants☆20Jan 28, 2020Updated 6 years ago
- structure detection program☆18Nov 20, 2024Updated last year
- Calculates the Variant Allele Fraction of variants in VCF files☆19Nov 28, 2024Updated last year
- SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the n…☆182Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆11Apr 25, 2024Updated last year
- A tool set to assess the quality of the per read phasing and reduce the errors.☆13Jun 25, 2020Updated 5 years ago
- Sauce for Zwift without Patreon☆10Jan 28, 2025Updated last year
- GeneDMRs is an R package to detect the differentially methylated regions based on genes, gene body, CpG islands and gene body interacted …☆10Nov 18, 2023Updated 2 years ago
- CWL for GDC DNASeq workflows☆23Mar 30, 2026Updated 2 weeks ago
- Dockstore implementation of CGP core WGS analysis☆30Jun 8, 2020Updated 5 years ago
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆18Mar 24, 2026Updated 3 weeks ago