VanLoo-lab / griticLinks
A tool for timing complex copy number gains in cancer.
☆18Updated 2 months ago
Alternatives and similar repositories for gritic
Users that are interested in gritic are comparing it to the libraries listed below
Sorting:
- Multi-sample cancer phylogeny reconstruction☆35Updated 7 years ago
- A comprehensive toolkit for mutational signature analysis☆41Updated last year
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 4 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆38Updated last year
- DRAGEN Tumor/Normal workflow post-processing☆22Updated 2 years ago
- DriverPower☆26Updated 8 months ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 6 months ago
- Codes and Data for FFPEsig manuscript☆17Updated last year
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- Location of public benchmarking; primarily final results☆18Updated 7 months ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆45Updated 3 years ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 7 months ago
- Differential ATAC-seq toolkit☆27Updated last year
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆37Updated 5 years ago
- A computational method for inferring the cancer cell fraction of tumour structural variation from whole-genome sequencing data.☆41Updated last month
- MSKCC Reis-Filho Lab pipeline thingy☆17Updated 2 weeks ago
- An R package for predicting HR deficiency from mutation contexts☆29Updated 7 months ago
- ☆36Updated 6 years ago
- Flexible Bayesian inference of mutational signatures☆36Updated 2 years ago
- 📊Evaluating, filtering, comparing, and visualising VCF☆28Updated 2 years ago
- Structural Variation breakpoint discovery via adaptive learning☆16Updated 2 years ago
- Clonal and subclonal Copy Number Alteration quality check integrating somatic mutation☆22Updated last week
- Variant catalogue pipeline☆26Updated 5 months ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 5 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Updated last year
- R package to analyze aberrant splicing junctions in tumor samples to identify neoepitopes☆14Updated 3 weeks ago
- Filters for false-positive mutation calls in NGS☆34Updated 6 years ago
- Assembly of RNA reads to determine the effect of a cancer mutation on protein sequence☆25Updated last year
- Using k-mers to call HLA alleles in RNA sequencing data☆23Updated 7 years ago