A tool for timing complex copy number gains in cancer.
☆22Sep 6, 2026Updated this week
Alternatives and similar repositories for gritic
Users that are interested in gritic are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Search for activating regulatory variants in the tumor genome☆15Apr 11, 2025Updated last year
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆22Dec 14, 2021Updated 4 years ago
- ☆13Apr 16, 2026Updated 4 months ago
- Code accompanying The Evolutionary history of 2,658 cancers☆48Apr 16, 2021Updated 5 years ago
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆13Jan 24, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A computational method for inferring the cancer cell fraction of tumour structural variation from whole-genome sequencing data.☆44Aug 21, 2025Updated last year
- Code accompanying "The evolutionary history of 2,658 cancers", Nature 578, 122–128 (2020)☆17Jan 15, 2020Updated 6 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆34Feb 18, 2026Updated 6 months ago
- Battenberg R package for subclonal copynumber estimation☆101May 11, 2026Updated 3 months ago
- ☆86Apr 17, 2025Updated last year
- Structural Variant Prediction Viewer☆36Jul 19, 2017Updated 9 years ago
- Decrypting somatic mutation patterns to reveal the evolution of cancer☆57Mar 10, 2021Updated 5 years ago
- An R package to time somatic mutations☆73Dec 12, 2020Updated 5 years ago
- ☆28Jun 14, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Hemang Parikh☆11Jan 12, 2016Updated 10 years ago
- ☆81Jul 12, 2023Updated 3 years ago
- SigProfilerPlotting provides a standard tool for displaying all types of mutational signatures as well as all types of mutational pattern…☆53Feb 8, 2026Updated 7 months ago
- FInding REliable Variants without ArTifacts☆23Nov 18, 2022Updated 3 years ago
- An R package to interpret biological trends from DNA methylation data☆18May 24, 2022Updated 4 years ago
- ☆21Aug 11, 2021Updated 5 years ago
- A framework to infer mutational signatures in cancer over time☆58Jul 9, 2019Updated 7 years ago
- Import and run CWL workflows on DNAnexus (alpha)☆13Sep 12, 2018Updated 7 years ago
- An R package to plot maps of clone distributions in somatic evolution☆20Aug 3, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A novel management, annotation, and machine learning framework for analyzing cancer mutations☆31Jul 4, 2024Updated 2 years ago
- Superseded by https://github.com/MD-Anderson-Bioinformatics/BatchEffectsPackage☆12Aug 13, 2020Updated 6 years ago
- An Expectation-Maximization algorithm to infer mutational signatures☆27Nov 16, 2016Updated 9 years ago
- structure detection program☆18Nov 20, 2024Updated last year
- A comprehensive pipeline to analyze and visualize structural variants☆20Jan 28, 2020Updated 6 years ago
- CALDER (Cancer Analysis of Longitudinal Data through Evolutionary Reconstruction) reconstructs evolutionary trees from longitudinal bulk …☆15Nov 28, 2023Updated 2 years ago
- Implementation of FACETS for Terra☆12Jan 20, 2023Updated 3 years ago
- SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the n…☆188Aug 4, 2026Updated last month
- ☆11Apr 25, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Calculates the Variant Allele Fraction of variants in VCF files☆19Nov 28, 2024Updated last year
- A tool set to assess the quality of the per read phasing and reduce the errors.☆13Jun 25, 2020Updated 6 years ago
- A complete Snakemake pipeline for detecting allele specific expression in RNA-seq☆10Jul 10, 2021Updated 5 years ago
- Sauce for Zwift without Patreon