A tool for timing complex copy number gains in cancer.
☆24Nov 5, 2026Updated this week
Alternatives and similar repositories for gritic
Users that are interested in gritic are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code accompanying "The evolutionary history of 2,658 cancers", Nature 578, 122–128 (2020)☆18Jan 15, 2020Updated 6 years ago
- Search for activating regulatory variants in the tumor genome☆15Apr 11, 2025Updated last year
- Annotate variants in a VCF file with technical annotations from one or more BAMs☆10Apr 10, 2026Updated 6 months ago
- Battenberg R package for subclonal copynumber estimation☆100May 11, 2026Updated 5 months ago
- Code accompanying The Evolutionary history of 2,658 cancers☆50Apr 16, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆86Apr 17, 2025Updated last year
- Dirichlet Process Clustering Pre-Processing Pipeline☆10Feb 20, 2026Updated 8 months ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆34Feb 18, 2026Updated 8 months ago
- A computational method for inferring the cancer cell fraction of tumour structural variation from whole-genome sequencing data.☆45Aug 21, 2025Updated last year
- ☆14Updated this week
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆22Dec 14, 2021Updated 4 years ago
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆13Jan 24, 2023Updated 3 years ago
- Repository for the Sequoia phylogeny reconstruction pipeline☆11Feb 17, 2026Updated 8 months ago
- ☆12Apr 25, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A comprehensive pipeline to analyze and visualize structural variants☆20Jan 28, 2020Updated 6 years ago
- An R package to plot maps of clone distributions in somatic evolution☆20Aug 3, 2026Updated 3 months ago
- ☆13Apr 16, 2026Updated 6 months ago
- HATCHet (Holistic Allele-specific Tumor Copy-number Heterogeneity) is an algorithm that infers allele and clone-specific CNAs and WGDs jo…☆73Sep 29, 2026Updated last month
- A Julia package for extracting mutation signatures using topic models☆20Feb 23, 2022Updated 4 years ago
- Joint calling of gVCF, following GATK4 Best Practices☆11Apr 3, 2019Updated 7 years ago
- ☆19Jan 30, 2023Updated 3 years ago
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆20Jul 6, 2026Updated 4 months ago
- Pan gGnome Viewer☆10Sep 24, 2026Updated last month
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Structural Variant Prediction Viewer☆36Jul 19, 2017Updated 9 years ago
- An R package to time somatic mutations☆73Dec 12, 2020Updated 5 years ago
- CWL for GDC DNASeq workflows☆23Sep 27, 2026Updated last month
- Decrypting somatic mutation patterns to reveal the evolution of cancer☆57Mar 10, 2021Updated 5 years ago
- ☆11May 27, 2025Updated last year
- Multi-nucleotide Variation Annotation Corrector☆11Dec 13, 2022Updated 3 years ago
- Fast, self-contained VCF to MAF converter with embedded annotation (Rust rewrite of vcf2maf)☆26Oct 12, 2026Updated 3 weeks ago
- Rocking R at UMCCR☆10Oct 11, 2020Updated 6 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆44Aug 24, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Hemang Parikh☆11Jan 12, 2016Updated 10 years ago
- cDriver R package for finding candidate driver genes in cancers☆18Jan 18, 2018Updated 8 years ago
- Mutational signature analysis for low statistics SNV data☆67Aug 7, 2024Updated 2 years ago
- SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the n…☆187Sep 29, 2026Updated last month
- ☆28Oct 29, 2026Updated last week
- Multi-sample cancer phylogeny reconstruction☆36Oct 19, 2017Updated 9 years ago
- FInding REliable Variants without ArTifacts☆21Nov 18, 2022Updated 3 years ago