marbl / harvest-toolsLinks
☆10Updated 7 months ago
Alternatives and similar repositories for harvest-tools
Users that are interested in harvest-tools are comparing it to the libraries listed below
Sorting:
- ⛓ Correct misassemblies using linked AND long reads☆60Updated last year
- MUMmer3☆17Updated 3 years ago
- Scalable long read self-correction and assembly polishing with multiple sequence alignment☆55Updated last year
- An SRA tool that takes as input local fastq file from a clinical infection sample, identifies and removes any significant human read, and…☆48Updated last year
- A comprehensive and intuitive encapsulated OO class system for analyzing bacterial pangenomes in R.☆28Updated 2 years ago
- 🪡Correct and scaffold assemblies using long reads☆55Updated last year
- MetaCarvel: A scaffolder for metagenomes☆14Updated 10 months ago
- A draft genome scaffolder that uses multiple reference genomes in a graph-based approach.☆44Updated 4 years ago
- Mutual nearest neighbor graphs and data visualization for genomic population networks☆18Updated 3 years ago
- Split k-mer analysis – version 2☆87Updated 5 months ago
- Graphical interactive tool for the visualization of sequence graphs in GFA format.☆70Updated 6 years ago
- ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refse…☆97Updated 3 months ago
- Genome comparison via de Bruijn graph. To get the latest stable version, please visit our site.☆68Updated 4 years ago
- ✏️ Genome assembly polishing & SNV detection☆69Updated 2 weeks ago
- Extract metagenome-assembled genomes (MAGs) from metagenomic data using Hi-C.☆23Updated 3 weeks ago
- mGEMS Genomic epidemiology with mixed samples☆16Updated 10 months ago
- STAG: Species Tree from All Genes☆34Updated 6 years ago
- reference-based long read assemblies of bacterial genomes☆50Updated 3 years ago
- Gene-flank analysis tool☆28Updated 7 months ago
- Small collection of tools for performing quality control on coronavirus sequencing data and genomes☆48Updated last year
- Evaluate variant calls and its combination with k-mer multiplicity☆67Updated 2 years ago
- Concatenates FASTA formatted files to one "phyml" (PHYLIP) formatted file☆69Updated 9 months ago
- convert PAF format to CHAIN format☆30Updated 2 months ago
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆52Updated 2 years ago
- RCandy: an R package for visualising homologous recombination events in bacterial genomes☆24Updated 3 years ago
- Split Kmer Analysis☆65Updated 3 years ago
- 🚝RAILS and 👞🔨Cobbler: Assembly Improvement by Long Sequence Scaffolding/Gap-filling☆27Updated last year
- Inferring bacterial recombination rates from large-scale sequencing datasets.☆42Updated 2 years ago
- ☆17Updated 5 years ago
- Mumemto: multi-MUM and MEM finding across pangenomes☆102Updated last week