marbl / harvest-toolsLinks
☆10Updated 10 months ago
Alternatives and similar repositories for harvest-tools
Users that are interested in harvest-tools are comparing it to the libraries listed below
Sorting:
- MUMmer3☆17Updated 3 years ago
- MetaCarvel: A scaffolder for metagenomes☆14Updated last year
- A comprehensive and intuitive encapsulated OO class system for analyzing bacterial pangenomes in R.☆28Updated 2 years ago
- A draft genome scaffolder that uses multiple reference genomes in a graph-based approach.☆45Updated 4 years ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated last month
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 6 months ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 6 years ago
- Fast and space-efficient taxonomic classification of long reads☆43Updated 2 months ago
- ☆30Updated 2 years ago
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- 🚝RAILS and 👞🔨Cobbler: Assembly Improvement by Long Sequence Scaffolding/Gap-filling☆27Updated last year
- Quickly get coverage statistics given reads and an assembly☆16Updated last year
- Fast and accurate tool for estimating genomic distances between genome-skims☆44Updated 2 years ago
- Colinear block visualisation tool☆31Updated last year
- reference-based long read assemblies of bacterial genomes☆51Updated 4 years ago
- viralFlye pipeline☆18Updated last year
- RCandy: an R package for visualising homologous recombination events in bacterial genomes☆25Updated 3 years ago
- Genome size estimation from long read overlaps☆62Updated this week
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆35Updated 4 months ago
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆31Updated 3 months ago
- Recombination-free trees☆60Updated 2 months ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- Annotated Genome Optimization Using Transcriptome Information☆20Updated 5 years ago
- Gene-flank analysis tool☆33Updated 10 months ago
- Plasmid analysis using rearrangement distances☆46Updated last month
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆21Updated 6 years ago
- SpydrPick: mutual information based detection of pairs of genomic loci co-evolving under a shared selective pressure.☆13Updated 3 years ago
- ♥ Fast and Accurate Estimation of Evolutionary Distances☆29Updated 6 months ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- Automatic evaluation of HGTs☆30Updated 9 months ago