sgkit-dev / vcf-zarr-specLinks
VCF Zarr Specification
☆15Updated last week
Alternatives and similar repositories for vcf-zarr-spec
Users that are interested in vcf-zarr-spec are comparing it to the libraries listed below
Sorting:
- VEP-like tool for sequence ontology and HGVS annotation of VCF files☆24Updated this week
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Updated 3 years ago
- A Rust library for storing generic genomic data by sorted chromosome name☆17Updated last year
- Lossless VCF compression☆21Updated 3 years ago
- Genome browser hub for the T2T genomes and resources☆27Updated 4 months ago
- convert reads from repeated measures of same piece of DNA into spaced matricies for deep learners.☆14Updated 2 years ago
- The python binding for D4 format☆16Updated 4 years ago
- Population-scale detection of novel sequence insertions☆27Updated 3 years ago
- gia: Genomic Interval Arithmetic☆66Updated last year
- A lightweight library for working with PAF (Pairwise mApping Format) files☆30Updated 3 years ago
- Sample Contamination Estimate from VCF☆20Updated last year
- drunk on perbase pileups and lua expressions☆19Updated 2 months ago
- add true-negative SVs from a population callset to a truth-set.☆15Updated 3 years ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆34Updated 8 months ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆47Updated 5 months ago
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated 3 weeks ago
- ☆14Updated 5 years ago
- A Nextflow pipeline for genome and pan-genome annotation☆15Updated last week
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Updated 3 months ago
- This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…☆30Updated last year
- Bam Read Index - Extract alignments from a bam file by readname☆28Updated last year
- 🧬 High-performance VCF file parser and reformatter with VEP annotation support. Converts complex VCF files to analyzable TSV format …☆45Updated 5 months ago
- Benchmark structural variant calls against a reference set☆18Updated 2 weeks ago
- Generate random test data for bioinformatics☆27Updated last year
- A Rust-Based suite of utilities for ultra-fast genomic feature extraction☆41Updated last month
- horizontal pileup☆16Updated 3 years ago
- ☆33Updated 3 years ago
- Extracts subgraphs or components from a graph in GFA format☆24Updated last year
- Indel-aware consensus for aligned BAM☆21Updated 5 months ago