VCF Zarr Specification
☆16Jun 4, 2026Updated last week
Alternatives and similar repositories for vcf-zarr-spec
Users that are interested in vcf-zarr-spec are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- bcftools-compatible querying and format conversion for VCF Zarr☆26Jun 8, 2026Updated last week
- Convert bioinformatics file formats to Zarr☆47Jun 4, 2026Updated last week
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Aug 19, 2022Updated 3 years ago
- Read and write VCF and BCF files☆14Oct 16, 2025Updated 7 months ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Lossless VCF compression☆21Mar 4, 2022Updated 4 years ago
- ☆19May 10, 2023Updated 3 years ago
- A Nextflow pipeline for genome and pan-genome annotation☆16Feb 22, 2026Updated 3 months ago
- DNA kmer operations for nim☆14Apr 24, 2022Updated 4 years ago
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated last year
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆21Feb 13, 2026Updated 4 months ago
- ☆21Feb 15, 2025Updated last year
- Population-scale Ancestral Recombination Graph (ARG) library☆186Jun 9, 2026Updated last week
- A Python package for landscape genomic simulation☆13Dec 15, 2025Updated 6 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Aug 4, 2021Updated 4 years ago
- Tools for dealing with tree sequences coming to and from SLiM.☆28May 22, 2026Updated 3 weeks ago
- Text objects and motions for Latex editing in Vim.☆14Sep 28, 2020Updated 5 years ago
- A flexible tool for the multi-resolution localization of causal variants across the genome☆11Feb 19, 2021Updated 5 years ago
- SimRA (Simulation based on Random-graphs Algorithms) is a framework for simulating generic and complex evolutionary scenarios of multiple…☆13Nov 28, 2022Updated 3 years ago
- Artisanal 🤣 bioinformatics tools and pipelines in Scala☆20Jan 28, 2020Updated 6 years ago
- implicit pangenome graph☆108Updated this week
- haplotypes genotypes and alleles example decision synthesizer☆20Jun 13, 2019Updated 7 years ago
- recompute GFA link overlaps☆26Sep 14, 2022Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Efficient C functions to compute the summary statistics (flagstats) for sequencing read sets.☆15Dec 16, 2019Updated 6 years ago
- ☆14Oct 14, 2020Updated 5 years ago
- Collection of simple C scripts for parsing vcf or bam files using the htslib C library. These scripts can be used as the starting point f…☆11Dec 11, 2020Updated 5 years ago
- ordered multinomial models☆12Updated this week
- Software for detecting introgression using supervised machine learning☆21Nov 21, 2022Updated 3 years ago
- generate multiset combinations (n multichoose k)☆27Apr 23, 2024Updated 2 years ago
- The main website for the OpenMendel project.☆13Jul 24, 2022Updated 3 years ago
- ☆16May 23, 2026Updated 3 weeks ago
- convert variation graph alignments to coverage maps over nodes☆27Jan 21, 2026Updated 4 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Basic OpenMendel tutorials☆11Jul 24, 2022Updated 3 years ago
- Perform differential expression analysis on cohort-scale single cell datasets using linear mixed models☆23May 22, 2026Updated 3 weeks ago
- Datastructures and algorithms for working with genetic variation☆45Apr 20, 2023Updated 3 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆33Jun 12, 2025Updated last year
- COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)☆20Nov 24, 2024Updated last year
- TQSLE v1.0 released☆10Aug 29, 2023Updated 2 years ago
- lace up GFA files using panSN path name sub-ranges to coordinate the lacing☆14Jul 30, 2025Updated 10 months ago