sgkit-dev / vcf-zarr-spec
VCF Zarr Specification
☆12Updated 2 weeks ago
Alternatives and similar repositories for vcf-zarr-spec:
Users that are interested in vcf-zarr-spec are comparing it to the libraries listed below
- Lossless VCF compression☆18Updated 2 years ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Updated 2 years ago
- Samwell: a python package for using genomic files... well☆20Updated 2 years ago
- The python binding for D4 format☆16Updated 3 years ago
- convert reads from repeated measures of same piece of DNA into spaced matricies for deep learners.☆14Updated last year
- A Rust library for storing generic genomic data by sorted chromosome name☆17Updated 4 months ago
- Hidden Markov Model based Copy number caller☆20Updated 3 months ago
- ☆10Updated 2 weeks ago
- Hierarchical binned indexed data store for on-disk genomic data.☆14Updated last month
- Novel Adjacency Identification with Barcoded Reads☆13Updated 2 years ago
- VariantStore: A Large-Scale Genomic Variant Search Index☆39Updated 3 years ago
- Fast sequencing data quality metrics☆23Updated last week
- Benchmark structural variant calls against a reference set☆17Updated 3 months ago
- convert CHAIN format to PAF format☆14Updated 2 months ago
- add true-negative SVs from a population callset to a truth-set.☆15Updated 2 years ago
- horizontal pileup☆16Updated 2 years ago
- Lightweight Python interfaces for reading, writing, and querying Genomic Regions (BED)☆14Updated 3 weeks ago
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated 3 weeks ago
- Haplotype phaser for next-generation sequencing data☆13Updated 3 years ago
- A long-read analysis toolbox for cancer and population genomics☆21Updated last week
- ziglang + htslib☆20Updated 3 years ago
- Structural variant pipeline☆17Updated 4 years ago
- Index and query k-mer matrices in BGZF☆12Updated 6 years ago
- ☆9Updated 2 years ago
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆22Updated last year
- Experimental getopt, gzip reader, FASTA/Q parser and interval queries in nim-lang☆32Updated 4 years ago
- Tool to estimate deltas for sequence sets and answer questions about relative contribution☆21Updated this week
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆13Updated 5 years ago
- Reducing reference bias using multiple population reference genomes☆32Updated 8 months ago
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Updated 3 years ago