Alternatives and similar repositories for vcztools

Users that are interested in vcztools are comparing it to the libraries listed below

• sgkit-dev / bio2zarr
  Convert bioinformatics file formats to Zarr
  ☆36Updated 3 weeks ago
• manzt / pygv
  a minimal, scriptable genome browser for python
  ☆51Updated 6 months ago
• snakemake / snakemake-executor-plugin-slurm
  A Snakemake executor plugin for submitting jobs to a SLURM cluster
  ☆36Updated this week
• sgkit-dev / vcf-zarr-spec
  VCF Zarr Specification
  ☆15Updated last month
• Wytamma / snk
  Snakemake workflow management system and CLI generation tool
  ☆58Updated 2 weeks ago
• BiocPy / GenomicRanges
  Container class to represent genomic locations and support genomic analysis
  ☆22Updated this week
• noamteyssier / bedrs
  bedtools-like functionality for interval sets in rust
  ☆52Updated 10 months ago
• conda-incubator / conda-env-builder
  Build and maintain multiple custom conda environments all in one place.
  ☆38Updated 6 months ago
• fulcrumgenomics / pybedlite
  Lightweight Python interfaces for reading, writing, and querying Genomic Regions (BED)
  ☆14Updated last week
• endrebak / poranges
  pyranges/bioframe for polars
  ☆18Updated last year
• vsbuffalo / genomap
  A Rust library for storing generic genomic data by sorted chromosome name
  ☆17Updated 8 months ago
• myriad-opensource / samwell
  Samwell: a python package for using genomic files... well
  ☆20Updated 2 years ago
• vsbuffalo / hgindex
  Hierarchical binned indexed data store for on-disk genomic data.
  ☆14Updated 5 months ago
• fulcrumgenomics / fgpyo
  Quality of life improvements for Bioinformatics in Python.
  ☆29Updated last week
• abdenlab / oxbow
  Oxbow makes genomic data ready for high-performance analytics.
  ☆81Updated this week
• HumanCellAtlas / table-testing
  requirements, examples, and tests for expression matrix file formats
  ☆22Updated 6 years ago
• COMBINE-lab / pyroe
  ☆16Updated 5 months ago
• nextflow-io / vscode-language-nextflow
  Nextflow language support for Visual Studio Editor
  ☆34Updated last week
• noamteyssier / gia
  gia: Genomic Interval Arithmetic
  ☆65Updated 10 months ago
• brentp / spacepile
  convert reads from repeated measures of same piece of DNA into spaced matricies for deep learners.
  ☆14Updated 2 years ago
• pyranges / bamread
  Bam to Pandas DataFrame, quickly
  ☆13Updated last month
• snakemake / snakedeploy
  deploy a snakemake pipeline directly from version control (under development)
  ☆24Updated 3 months ago
• Plant-Food-Research-Open / genepal
  A Nextflow pipeline for genome and pan-genome annotation
  ☆13Updated this week
• fulcrumgenomics / fqtk
  Fast FASTQ sample demultiplexing in Rust.
  ☆62Updated 3 weeks ago
• vsbuffalo / granges
  A Rust library and command line tool for working with genomic ranges and their data.
  ☆101Updated last year
• vembrane / vembrane
  vembrane filters VCF records using python expressions
  ☆59Updated last week
• fulcrumgenomics / nf-dotenv
  Automatically source dotenv files into your Nextflow scope
  ☆9Updated 2 months ago
• pepkit / looper
  A job submitter for Portable Encapsulated Projects
  ☆22Updated 3 months ago
• brentp / bw-python
  python wrapper to dpryan79's bigwig library using cffi
  ☆19Updated 9 years ago
• aprilweilab / grgl
  Genotype Representation Graph Library
  ☆35Updated last week