Alternatives and similar repositories for vcztools

Users that are interested in vcztools are comparing it to the libraries listed below

• sgkit-dev / bio2zarr
  Convert bioinformatics file formats to Zarr
  ☆39Updated 5 months ago
• manzt / pygv
  a minimal, scriptable genome browser for python
  ☆52Updated 11 months ago
• snakemake / snakemake-executor-plugin-slurm
  A Snakemake executor plugin for submitting jobs to a SLURM cluster
  ☆42Updated this week
• snakemake / snakedeploy
  deploy a snakemake pipeline directly from version control (under development)
  ☆23Updated 2 weeks ago
• pyranges / ruranges
  Rust Backend for PyRanges Operations. More featureful and much faster replacement for the NCLS library
  ☆18Updated last month
• noamteyssier / bedrs
  bedtools-like functionality for interval sets in rust
  ☆54Updated 3 months ago
• biodatageeks / polars-bio
  Blazing-Fast Bioinformatic Operations on Python DataFrames
  ☆101Updated 3 weeks ago
• snakemake / snakemake-github-action
  A Github action for running a Snakemake workflow
  ☆61Updated last week
• panoptes-organization / panoptes
  Monitor computational workflows in real time
  ☆73Updated last year
• pepkit / peppy
  Project metadata manager for PEPs in Python
  ☆38Updated this week
• sgkit-dev / vcf-zarr-spec
  VCF Zarr Specification
  ☆15Updated 6 months ago
• fulcrumgenomics / pybedlite
  Lightweight Python interfaces for reading, writing, and querying genomic regions (BED)
  ☆14Updated last month
• Wytamma / snk
  Snakemake workflow management system and CLI generation tool
  ☆62Updated last month
• popsim-consortium / demes-python
  Tools for describing and manipulating demographic models.
  ☆19Updated 6 months ago
• vsbuffalo / genomap
  A Rust library for storing generic genomic data by sorted chromosome name
  ☆17Updated last year
• pepkit / looper
  Modular job submitter for arbitrary pipelines or commands.
  ☆24Updated 2 weeks ago
• vsbuffalo / granges
  A Rust library and command line tool for working with genomic ranges and their data.
  ☆100Updated last year
• abdenlab / oxbow
  Oxbow makes genomic data ready for high-performance analytics.
  ☆144Updated 2 weeks ago
• vembrane / vembrane
  vembrane filters VCF records using python expressions
  ☆66Updated last month
• rhpvorderman / sequali
  Fast sequencing data quality metrics
  ☆31Updated 2 months ago
• conda-incubator / conda-env-builder
  Build and maintain multiple custom conda environments all in one place.
  ☆39Updated 11 months ago
• natir / vcf2parquet
  Convert vcf in parquet
  ☆27Updated 9 months ago
• jackh726 / bigtools
  A high-performance BigWig and BigBed library in Rust
  ☆107Updated last month
• endrebak / poranges
  pyranges/bioframe for polars
  ☆18Updated 2 years ago
• brentp / fraguracy
  overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites
  ☆33Updated 5 months ago
• TheJacksonLaboratory / pyBedGraph
  A Python package for fast operations on 1-dimensional genomic signal tracks
  ☆23Updated 5 years ago
• noamteyssier / gia
  gia: Genomic Interval Arithmetic
  ☆64Updated last year
• snakemake / snakemake-workflow-catalog
  A statically generated catalog of available Snakemake workflows
  ☆35Updated last week
• nf-core / seqinspector
  QC pipeline to inspect your sequences
  ☆14Updated this week
• mdshw5 / simplesam
  Simple pure Python SAM parser and objects for working with SAM records
  ☆64Updated 3 years ago