sgkit-dev / vcztoolsLinks
Partial reimplementation of bcftools for VCF Zarr
☆16Updated 3 weeks ago
Alternatives and similar repositories for vcztools
Users that are interested in vcztools are comparing it to the libraries listed below
Sorting:
- Convert bioinformatics file formats to Zarr☆36Updated last month
- a minimal, scriptable genome browser for python☆51Updated 6 months ago
- Build and maintain multiple custom conda environments all in one place.☆39Updated 7 months ago
- VCF Zarr Specification☆15Updated last month
- A Snakemake executor plugin for submitting jobs to a SLURM cluster☆38Updated last week
- A job submitter for Portable Encapsulated Projects☆22Updated 4 months ago
- Oxbow makes genomic data ready for high-performance analytics.☆108Updated 3 weeks ago
- Phylogenetics toolkit for the PyData Ecosystem☆11Updated last year
- Tools for describing and manipulating demographic models.☆19Updated last month
- Fast sequencing data quality metrics☆26Updated last month
- Lightweight Python interfaces for reading, writing, and querying Genomic Regions (BED)☆14Updated 3 weeks ago
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- A Github action for running a Snakemake workflow☆59Updated last month
- SQL support plugin for Nextflow☆30Updated last month
- Convert vcf in parquet☆27Updated 5 months ago
- Container class to represent genomic locations and support genomic analysis☆22Updated last week
- deploy a snakemake pipeline directly from version control (under development)☆24Updated 4 months ago
- ☆16Updated 6 months ago
- Library for indexing VCF files for random access searches by rsID☆17Updated last year
- bedtools-like functionality for interval sets in rust☆52Updated 10 months ago
- Project metadata manager for PEPs in Python☆37Updated 9 months ago
- A python package for showing JBrowse views☆25Updated last year
- Genotype Representation Graph Library☆35Updated this week
- Snakemake workflow management system and CLI generation tool☆58Updated last month
- Interface to various variant calling formats.☆30Updated last year
- convert reads from repeated measures of same piece of DNA into spaced matricies for deep learners.☆14Updated 2 years ago
- Linter rules for Nextflow DSL scripts☆34Updated last week
- Reads the output from CLI help commands, and generates machine readable schemas (CWL etc)☆14Updated 4 years ago
- Cookiecutter profile for making a NextFlow-based bioinformatics tool☆16Updated last year
- A Python package for fast operations on 1-dimensional genomic signal tracks☆24Updated 5 years ago