Partial reimplementation of bcftools for VCF Zarr
☆23Apr 23, 2026Updated this week
Alternatives and similar repositories for vcztools
Users that are interested in vcztools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Convert bioinformatics file formats to Zarr☆45Updated this week
- VCF Zarr Specification☆15Mar 18, 2026Updated last month
- An awesome tool to visualize snakemake rule graphs☆32Apr 15, 2026Updated 2 weeks ago
- A Nextflow pipeline for genome and pan-genome annotation☆16Feb 22, 2026Updated 2 months ago
- xSqueezeIt VCF/BCF Genotype data compressor with extensible compute friendly format☆14Aug 5, 2025Updated 8 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Python Primer Design Library☆14Mar 27, 2026Updated last month
- A Rust library for storing generic genomic data by sorted chromosome name☆17Sep 26, 2024Updated last year
- Scalable genetics toolkit☆275Mar 2, 2026Updated last month
- an example of building up a targets analysis for -omics data☆12Jun 23, 2023Updated 2 years ago
- Accelerated Bayesian inference of population size history from whole genome data.☆35Apr 6, 2026Updated 3 weeks ago
- Tools for dealing with tree sequences coming to and from SLiM.☆28Mar 9, 2026Updated last month
- Text objects and motions for Latex editing in Vim.☆14Sep 28, 2020Updated 5 years ago
- snakemake grammar for tree-sitter, based on tree-sitter-python☆12Sep 18, 2025Updated 7 months ago
- SimRA (Simulation based on Random-graphs Algorithms) is a framework for simulating generic and complex evolutionary scenarios of multiple…☆13Nov 28, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Snakemake module for the snpArcher pipeline for population size change inference.☆10Nov 12, 2024Updated last year
- ☆16Aug 25, 2025Updated 8 months ago
- A Python library for processing genomes with ease☆49Apr 12, 2026Updated 2 weeks ago
- Drawing functions for Demes demographic models☆25Apr 13, 2026Updated 2 weeks ago
- OCaml record fields as first class values☆21Apr 6, 2026Updated 3 weeks ago
- Oxbow makes genomic data ready for high-performance analytics.☆153Mar 21, 2026Updated last month
- PyPop: Python for Population Genomics☆25Apr 20, 2026Updated last week
- A useful tool for shuffling biological sequences while preserving the k-let counts☆14Apr 23, 2024Updated 2 years ago
- Convert vcf in parquet☆31Jan 23, 2025Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Annotated sequence data☆11Feb 2, 2025Updated last year
- Genomic sequence preprocessing toolkit☆13Jan 13, 2026Updated 3 months ago
- A set of tutorials for msprime and tskit.☆21Updated this week
- convert reads from repeated measures of same piece of DNA into spaced matricies for deep learners.☆14Apr 21, 2023Updated 3 years ago
- a short graduate population biology course☆13Feb 22, 2023Updated 3 years ago
- SEEKIN: SEquence-based Estimation of KINship☆14Oct 11, 2017Updated 8 years ago
- Tool for analyzing clusters of genes using LLM providers.☆27Apr 22, 2026Updated last week
- Jax code for functional genomics ML☆14Mar 5, 2025Updated last year
- LMS algorithm for computing edit distance with SIMD optimizations☆11Mar 25, 2024Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- A high efficiency binary format for sequencing data☆100Feb 25, 2026Updated 2 months ago
- A python library for accessing 2bit files☆21Apr 21, 2026Updated last week
- Hummingbird: Efficient Performance Prediction for Executing Genomic Applications in the Cloud: https://doi.org/10.1093/bioinformatics/bta…☆20Jul 19, 2024Updated last year
- Official codes for Scalable Infomin Learning, NeurIPS 2022☆14Feb 28, 2023Updated 3 years ago
- ☆91Feb 18, 2019Updated 7 years ago
- Python bindings for openlava☆10Oct 24, 2019Updated 6 years ago
- Implementation of gene-level rare coding variant association tests targeting allelic series: cases where increasingly deleterious mutatio…☆14Oct 22, 2025Updated 6 months ago