bcftools-compatible querying and format conversion for VCF Zarr
☆28Jun 8, 2026Updated 4 months ago
Alternatives and similar repositories for vcztools
Users that are interested in vcztools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Convert bioinformatics file formats to Zarr☆48Oct 2, 2026Updated 3 weeks ago
- a short graduate population biology course☆13Feb 22, 2023Updated 3 years ago
- ☆14Dec 3, 2024Updated last year
- Model-free inference of tree sequences from unphased genotypes☆13May 22, 2026Updated 5 months ago
- Linear mixed models on ARGs☆18Jan 16, 2026Updated 9 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- This software is made to take in graph node based family pedigree and simulate genetic information onto that pedigree via SLiM.☆13Aug 20, 2026Updated 2 months ago
- Scalable genetics toolkit☆285Updated this week
- VCF Zarr Specification☆20Jun 4, 2026Updated 4 months ago
- Infer a tree sequence from genetic variation data.☆65Oct 23, 2026Updated last week
- an API for intersections of genomic data☆150Oct 4, 2026Updated 3 weeks ago
- Phylogenetics toolkit for the PyData Ecosystem☆11May 10, 2024Updated 2 years ago
- neural network for estimating demographic maps from SNPs☆13Oct 13, 2026Updated 2 weeks ago
- Tools for dealing with tree sequences coming to and from SLiM.☆28Sep 26, 2026Updated last month
- Population-scale Ancestral Recombination Graph (ARG) library☆192Oct 23, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Forward-time simulation in Python using fwdpp☆34Updated this week
- A Rust library for storing generic genomic data by sorted chromosome name☆18Sep 26, 2024Updated 2 years ago
- Analysis of inference methods on standard population models☆25Dec 3, 2021Updated 4 years ago
- ☆19Aug 25, 2026Updated 2 months ago
- Python toolkit for fast genotype I/O, ancestry analysis, population-genetics statistics, genotype QC, GWAS, and visualization☆54Sep 10, 2026Updated last month
- A low-level Zarr API for Python, binding to Rust's Zarrs☆49Oct 19, 2026Updated last week
- Near-linear attention in theory and practice☆13Aug 10, 2026Updated 2 months ago
- The flare program performs local ancestry inference☆50Nov 4, 2025Updated 11 months ago
- cobraa (coalescent based reconstruction of ancient admixture): a hidden Markov model to infer ghost admixture using just a diploid sequen…☆26Jun 17, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A library of standard population genetic models☆145Updated this week
- SLiM is a genetically explicit forward simulation software package for population genetics and evolutionary biology. It is highly flexib…☆235Updated this week
- deep learning prediction of geographic location from individual genome sequences☆54Jan 20, 2025Updated last year
- Mapping scheme test software, to be extended to sequence graphs.☆10Sep 28, 2022Updated 4 years ago
- xSqueezeIt VCF/BCF Genotype data compressor with extensible compute friendly format☆14Aug 5, 2025Updated last year
- convert reads from repeated measures of same piece of DNA into spaced matricies for deep learners.☆14Apr 21, 2023Updated 3 years ago
- Bit-packed and well-typed biological sequences☆46Sep 22, 2026Updated last month
- Deep Learning Processing Library for Biological Data☆13Updated this week
- intro to programming for IE2 evolution students☆12Jan 31, 2024Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Simulate ARGs and genomic sequence data using population genetic models☆218Sep 15, 2026Updated last month
- nf-core pipeline for data submission to ENA☆22Oct 23, 2026Updated last week
- Write-once-read-many table for large datasets.☆27Oct 5, 2023Updated 3 years ago
- Fast heuristic ARG construction☆12Dec 12, 2016Updated 9 years ago
- ☆13Oct 23, 2026Updated last week
- Calculates the probability of a haplotype given a population reference panel☆12Dec 9, 2024Updated last year
- A hidden Markov model for detecting segments of shared ancestry (identity by descent)☆14Dec 15, 2023Updated 2 years ago