Alternatives and similar repositories for NetSeekR

Users that are interested in NetSeekR are comparing it to the libraries listed below

• abodein / timeOmics
  Time-Course Multi-Omics data integration
  ☆25Updated last year
• ncrna / PathogenTrack
  A pipeline to identify pathogenic microorganisms from scRNA-seq raw data.
  ☆27Updated last year
• ashleymaeconard / TIMEOR
  TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R
  ☆16Updated 3 years ago
• NBISweden / workshop-RNAseq
  Workshop • Analysis of RNA-seq data
  ☆36Updated last year
• crazyhottommy / pyflow-RNAseq
  RNAseq pipeline based on snakemake
  ☆26Updated 2 years ago
• vborjesson / TC_hunter
  Locate transgenic insertion sites
  ☆11Updated 2 years ago
• zhejilab / RibORF
  Identifying genome-wide translated open reading frames using ribosome profiling
  ☆23Updated 2 years ago
• zhongw2 / GeneTEFlow
  ☆23Updated 4 years ago
• stephenturner / mergelanes
  Merge fastq files split over lanes
  ☆20Updated 7 years ago
• s-andrews / sradownloader
  A script to make downloading of SRA/GEO data easier
  ☆30Updated last year
• nf-core / circdna
  Pipeline for the identification of extrachromosomal circular DNA (ecDNA) from Circle-seq, WGS, and ATAC-seq data that were generated from…
  ☆30Updated this week
• BioinfoUNIBA / QEdit
  RNA editing quantification in deep transcriptome data
  ☆15Updated 2 years ago
• huyustats / SCATS
  A statistical tool to detect differential alternative splicing events using single-cell RNA-seq
  ☆22Updated last year
• ICBI / viGEN
  viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data
  ☆27Updated 7 months ago
• jsh58 / DMRfinder
  Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data
  ☆28Updated last year
• ben-laufer / CpG_Me
  A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to …
  ☆23Updated 3 years ago
• djhn75 / RNAEditor
  ☆15Updated 2 years ago
• sib-swiss / RNAseq-introduction-training
  Webpage of the "Introduction to RNA-Seq: From quality control to pathway analysis - streamed" SIB course.
  ☆14Updated 8 months ago
• Xinglab / CLAM
  CLIP-seq Analysis of Multi-mapped reads
  ☆30Updated 3 years ago
• brwnj / fastq-multx
  Demultiplexes a fastq.
  ☆44Updated 4 years ago
• OlgaVT / Alternative-Splicing-Tools
  A list of alternative splicing analysis resources
  ☆43Updated 2 months ago
• hamidghaedi / Enrichment-Analysis
  From RNA-seq raw reads to enriched pathways by DEGs
  ☆32Updated last year
• WubingZhang / MAGeCKFlute
  Integrative analysis pipeline for pooled CRISPR functional genetic screens
  ☆30Updated last year
• bharani-lab / WES-Benchmarking-Pipeline_Manoj
  Benchmarking of aligners and variant callers for Whole Exome Sequencing data
  ☆19Updated 6 years ago
• dzhakparov / GeneSelectR
  ☆19Updated last year
• ratschlab / pancanatlas_code_public
  Public repository containing research code for the TCGA PanCanAtlas Splicing project
  ☆41Updated 4 years ago
• LosicLab / starchip
  Detection of Circular RNA and Fusions from RNA-Seq
  ☆32Updated 6 years ago
• mdozmorov / RNA-seq_notes
  A continually expanding collection of RNA-seq tools
  ☆50Updated 7 months ago
• yyoshiaki / VIRTUS
  A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.
  ☆34Updated 3 years ago
• PSSUN / CircCode
  A Python3-base pipeline for translated circular RNA(circRNA) identification
  ☆16Updated 2 years ago