attayeb / snaq
Qiime2 snakemake pipeline
☆16Updated 11 months ago
Related projects ⓘ
Alternatives and complementary repositories for snaq
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆25Updated last week
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆22Updated 4 months ago
- Set of utilities on sequences and BAM files☆25Updated 3 years ago
- ☆18Updated 3 months ago
- ☆25Updated 2 months ago
- MinPath (Minimal set of Pathways) is a parsimony approach for biological pathway reconstructions using protein family predictions, achiev…☆19Updated 3 years ago
- MAG Circularization Method☆33Updated 2 years ago
- A toolkit for prokaryotic comparative genomics☆25Updated last week
- scripts for microbiome analysis☆11Updated 3 months ago
- Trimming tool for Oxford Nanopore sequence data☆22Updated 3 years ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 2 years ago
- Pipeline for metagenome and metatranscriptome joint assembly☆18Updated last year
- Phylogeny Enhanded Prediction of PAN-genome☆39Updated 4 years ago
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆22Updated 7 months ago
- A shiny package for microbiome functional enrichment analysis☆36Updated 3 weeks ago
- Discover and annotate the virome☆31Updated last month
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆25Updated 5 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆27Updated last year
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆18Updated 2 years ago
- Gene-flank analysis tool☆26Updated 6 months ago
- ☆18Updated 2 years ago
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆23Updated last year
- MAGScoT - a MAG scoring and refinement tool☆28Updated last month
- Calculate assocations between genes and traits☆19Updated 3 weeks ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆49Updated this week
- Bacterial GWAS analysis☆32Updated last month
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated last year
- Prokaryotic Pangenome Analysis☆24Updated 2 years ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆29Updated last year
- Prophage Activity Estimator☆26Updated 5 months ago