Qiime2 snakemake pipeline
☆20Dec 21, 2023Updated 2 years ago
Alternatives and similar repositories for snaq
Users that are interested in snaq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Pipeline to run qiime2 with snakemake☆18Apr 17, 2020Updated 6 years ago
- Open-source bioinformatics pipeline for the preprocessing of raw sequencing data.☆33Jun 2, 2025Updated 11 months ago
- A tool used to cut adapter / qc / trimming / split / statistics for fastq data, it was developed in C.☆10Apr 9, 2018Updated 8 years ago
- A functional profiler for metagenomes using FracMinHash☆21Apr 20, 2026Updated last month
- zDB: comparative bacterial genomics made easy☆40May 6, 2026Updated 2 weeks ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- PgRC: Pseudogenome based Read Compressor☆14Nov 20, 2024Updated last year
- GrapeTree is a fully interactive, tree visualization program, which supports facile manipulations of both tree layout and metadata. Click…☆87Dec 15, 2024Updated last year
- ☆22Nov 12, 2025Updated 6 months ago
- Microbial Populations as Clusters Of Gene Transfer☆45Dec 4, 2023Updated 2 years ago
- Fast, sensitive and accurate protein remote homology search on GPUs☆15May 6, 2024Updated 2 years ago
- Amplicon sequence processing workflow using QIIME 2 and Snakemake☆45Mar 16, 2026Updated 2 months ago
- A simple-to-use tool for visualizing and comparing genome contexts for numerous genomes☆18Dec 1, 2025Updated 5 months ago
- Amplicon sequencing analysis workflow using DADA2 and QIIME2☆247Updated this week
- Methods used in the article "Assessment of statistical methods from single cell, bulk RNA-seq and metagenomics applied to microbiome data…☆11Jul 13, 2020Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Clinical Variant Annotation Pipeline☆10Apr 21, 2020Updated 6 years ago
- Make coverage plots from bam files!☆15Mar 17, 2026Updated 2 months ago
- R package to predict microbial loads☆18Updated this week
- Source code for ScanGEO Shiny App☆15Apr 18, 2022Updated 4 years ago
- AncestralClust☆12Jul 9, 2025Updated 10 months ago
- **DEFUNCT** dada2-based Nextflow pipeline for multiple amplicon data. See website for up-to-date version☆20Nov 1, 2019Updated 6 years ago
- Code for design of diagnostic PCR primers, and metabarcoding markers.☆63Nov 7, 2023Updated 2 years ago
- Chimera: An easy to use pipeline for Genome based Metabolic Network reconstruction, evaluation and visualization.☆18Oct 21, 2022Updated 3 years ago
- The Open Life Science Analysis Platform☆24Sep 16, 2025Updated 8 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Genetic correlation calculation pipeline via summary statistics for PheWeb☆13Mar 22, 2019Updated 7 years ago
- ☆10Jun 9, 2025Updated 11 months ago
- A python library to create, load, edit, validate and save RDML files.☆14May 2, 2026Updated 3 weeks ago
- MOVIS: A Multi-Omics Software Solution for Multi-modal Time-Series Clustering, Embedding, and Visualizing Tasks, by Aleksandar Anžel, Dom…☆10May 17, 2022Updated 4 years ago
- Kinship In Mixed Model Analysis of RNA-seq☆15Apr 14, 2025Updated last year
- Wetlab Calculator☆15Dec 3, 2024Updated last year
- A comprehensive and intuitive encapsulated OO class system for analyzing bacterial pangenomes in R.☆28Feb 14, 2023Updated 3 years ago
- CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data☆28May 13, 2026Updated last week
- ☆16Jun 2, 2021Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Tool for unsupervised contig binning from viral metagenomes☆18Oct 22, 2021Updated 4 years ago
- MetScale: snakemake workflows to scale metagenome analyses☆19May 15, 2025Updated last year
- de novo virus assembler of Illumina paired reads☆58May 17, 2021Updated 5 years ago
- An innovative GWAS procedure for studies on germplasm population and plant breeding☆14Nov 16, 2020Updated 5 years ago
- Phigaro is a scalable command-line tool for predicting phages and prophages☆52Jan 8, 2024Updated 2 years ago
- Accurate metagenomic profiling && Fast large-scale sequence/genome searching☆217Apr 24, 2026Updated last month
- RRSelection: A linkage disequilibrium method to detect selection region across population VCF☆14Feb 11, 2019Updated 7 years ago