Qiime2 snakemake pipeline
☆20Dec 21, 2023Updated 2 years ago
Alternatives and similar repositories for snaq
Users that are interested in snaq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Pipeline to run qiime2 with snakemake☆18Apr 17, 2020Updated 6 years ago
- Open-source bioinformatics pipeline for the preprocessing of raw sequencing data.☆33Jun 2, 2025Updated last year
- A tool used to cut adapter / qc / trimming / split / statistics for fastq data, it was developed in C.☆10Apr 9, 2018Updated 8 years ago
- A functional profiler for metagenomes using FracMinHash☆21Apr 20, 2026Updated 3 months ago
- snpick is a fast and memory-efficient Rust-based SNP extraction tool designed to handle large genomic alignments with minimal RAM usage a…☆16Jul 19, 2026Updated 3 weeks ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- PgRC: Pseudogenome based Read Compressor☆14Nov 20, 2024Updated last year
- zDB: comparative bacterial genomics made easy☆42May 6, 2026Updated 3 months ago
- ☆22Updated this week
- Amplicon sequence processing workflow using QIIME 2 and Snakemake☆46Jul 27, 2026Updated 2 weeks ago
- GrapeTree is a fully interactive, tree visualization program, which supports facile manipulations of both tree layout and metadata. Click…☆90Jul 17, 2026Updated 3 weeks ago
- Microbial Populations as Clusters Of Gene Transfer☆45Dec 4, 2023Updated 2 years ago
- Fast, sensitive and accurate protein remote homology search on GPUs☆15May 6, 2024Updated 2 years ago
- A simple-to-use tool for visualizing and comparing genome contexts for numerous genomes☆18Dec 1, 2025Updated 8 months ago
- Amplicon sequencing analysis workflow using DADA2 and QIIME2☆256Updated this week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Kinship In Mixed Model Analysis of RNA-seq☆16Apr 14, 2025Updated last year
- Methods used in the article "Assessment of statistical methods from single cell, bulk RNA-seq and metagenomics applied to microbiome data…☆11Jul 13, 2020Updated 6 years ago
- Clinical Variant Annotation Pipeline☆10Apr 21, 2020Updated 6 years ago
- AncestralClust☆13Jul 9, 2025Updated last year
- Chimera: An easy to use pipeline for Genome based Metabolic Network reconstruction, evaluation and visualization.☆20Oct 21, 2022Updated 3 years ago
- **DEFUNCT** dada2-based Nextflow pipeline for multiple amplicon data. See website for up-to-date version☆20Nov 1, 2019Updated 6 years ago
- R package to predict microbial loads☆19Updated this week
- Source code for ScanGEO Shiny App☆15Apr 18, 2022Updated 4 years ago
- Genetic correlation calculation pipeline via summary statistics for PheWeb☆13Mar 22, 2019Updated 7 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- A python library to create, load, edit, validate and save RDML files.☆14May 2, 2026Updated 3 months ago
- run-length BWT tools for genomic sequences☆19May 19, 2022Updated 4 years ago
- EPSAPG: An Extensive Protein Sequence Alignment Profiles Generator Pipeline Combining MMseqs2 and PSI-BLAST☆11Apr 4, 2024Updated 2 years ago
- Wetlab Calculator☆15Dec 3, 2024Updated last year
- CroCoDeEL detects cross-sample contamination in shotgun metagenomic data☆32Jun 12, 2026Updated 2 months ago
- Calculate the dn/ds (also pn and ps) value of cds☆14Jul 11, 2020Updated 6 years ago
- A comprehensive and intuitive encapsulated OO class system for analyzing bacterial pangenomes in R.☆28Feb 14, 2023Updated 3 years ago
- ☆16Jun 2, 2021Updated 5 years ago
- ☆10Jun 9, 2025Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Tool for unsupervised contig binning from viral metagenomes☆18Oct 22, 2021Updated 4 years ago
- Make coverage plots from bam files!☆15Mar 17, 2026Updated 4 months ago
- de novo virus assembler of Illumina paired reads☆58May 17, 2021Updated 5 years ago
- New version of submitr package. (Note: Just one t in submitr)☆12Oct 12, 2020Updated 5 years ago
- Phigaro is a scalable command-line tool for predicting phages and prophages☆53Jan 8, 2024Updated 2 years ago
- An innovative GWAS procedure for studies on germplasm population and plant breeding☆14Nov 16, 2020Updated 5 years ago
- MetScale: snakemake workflows to scale metagenome analyses☆19May 15, 2025Updated last year