Alternatives and similar repositories for fqsqueezer

Users that are interested in fqsqueezer are comparing it to the libraries listed below

• rcedgar / urmap
  URMAP ultra-fast read mapper
  ☆38Updated 4 years ago
• DixianZhu / deBWT
  A efficient method to construct BWT index of a given DNA sequence, especially useful for gigantic and high similar genome.
  ☆14Updated 9 years ago
• lh3 / gfa1
  This repo is deprecated. Please use gfatools instead.
  ☆16Updated 6 years ago
• IndexThePlanet / LoganSearch
  A k-mer search engine for all Sequence Read Archive public accessions
  ☆29Updated 6 months ago
• UCSC-nanopore-cgl / MarginPolish
  MarginPolish: Graph based assembly polishing
  ☆46Updated 4 years ago
• jermp / fulgor
  ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.
  ☆50Updated this week
• HongzheGuo / deBGA
  de Bruijn Graph-based read aligner
  ☆33Updated 6 years ago
• fjdf / slaMEM
  Finding Maximal Exact Matches (MEMs) using a Sampled LCP Array
  ☆10Updated last year
• VGP / vgp-tools
  ☆28Updated last month
• mkirsche / sapling
  SAPLING: Suffix Array Piecewise Linear INdex for Genomics
  ☆25Updated 4 years ago
• jts / smrest
  Tumour-only somatic mutation calling using long reads
  ☆26Updated 6 months ago
• Kmer-File-Format / kff-tools
  ☆17Updated last year
• oma219 / spumoni
  Pan-Genomic Matching Statistics
  ☆52Updated last year
• kamimrcht / REINDEER
  REINDEER REad Index for abuNDancE quERy
  ☆58Updated 9 months ago
• lh3 / htsbox
  My experimental tools on top of htslib. NOT OFFICIAL!!!
  ☆55Updated last year
• EvolBioInf / fur
  Find Unique genomic Regions
  ☆29Updated last month
• refresh-bio / colord
  A versatile compressor of third generation sequencing reads.
  ☆50Updated last year
• thegenemyers / ONEcode
  1-code framework: docs, C-library, and tools
  ☆16Updated 3 months ago
• vpc-ccg / lordfast
  Sensitive and Fast Alignment Search Tool for Long Read sequencing Data.
  ☆41Updated 5 years ago
• richarddurbin / modimizer
  a toolset for fast DNA read set matching and assembly using a new type of reduced kmer
  ☆37Updated 3 years ago
• lh3 / etrf
  Exact Tandem Repeat Finder (not a TRF replacement)
  ☆49Updated 5 years ago
• biointec / browniealigner
  Alignment algorithm for short Illumina reads to a de Bruijn graph
  ☆16Updated 5 years ago
• benedictpaten / marginPhase
  ☆34Updated 5 years ago
• SchulzLab / ORNA
  Fast in-silico normalization algorithm for NGS data
  ☆23Updated 3 years ago
• RabbitBio / RabbitQCPlus
  A more efficient quality control tool for sequencing data
  ☆29Updated 6 months ago
• ParBLiSS / PaSGAL
  Parallel Sequence to Graph Alignment
  ☆37Updated 2 years ago
• algo-cancer / CAMMiQ
  Metagenomics microbial abundance quantification
  ☆28Updated 2 years ago
• morispi / CONSENT
  Scalable long read self-correction and assembly polishing with multiple sequence alignment
  ☆55Updated last year
• maxrossi91 / moni
  MONI: A Pangenomic Index for Finding MEMs
  ☆37Updated last month
• nanoporetech / pyspoa
  Python bindings to spoa
  ☆20Updated last year