jts / nanopore-paper-analysisLinks
Code for nanopore paper
☆33Updated 9 years ago
Alternatives and similar repositories for nanopore-paper-analysis
Users that are interested in nanopore-paper-analysis are comparing it to the libraries listed below
Sorting:
- Various scripts and recipes for working with nanopore data☆34Updated 9 years ago
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆30Updated 4 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Using kallisto for metagenomic analysis☆50Updated 8 years ago
- Experimental pipeline for correcting nanopore reads☆39Updated 8 years ago
- UCSC Nanopore☆43Updated 5 years ago
- catalog for long-read sequencing tools☆32Updated 2 years ago
- Merge transcriptome assemblies☆31Updated 8 years ago
- Scripts and programs for the Holt Lab's MinION desktop☆32Updated 4 years ago
- A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate☆30Updated 3 years ago
- A method of assessing sequence complexity based on kmer frequencies☆32Updated 7 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- OPAL: Open-community Profiling Assessment tooL☆28Updated 4 months ago
- Structural variant caller☆54Updated 3 years ago
- Maximum likelihood demultiplexing☆47Updated 3 months ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 4 years ago
- Remove lambda phage reads from a fastq file☆29Updated 2 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆66Updated 2 years ago
- Some simple scripts to ease management and local basecalling of millions of FAST5 files☆25Updated 7 years ago
- NaS is a hybrid approach developped to take advantage of data generated using MinION device. We combine Illumina and Oxford Nanopore tech…☆15Updated 8 years ago
- ☆52Updated 4 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 7 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 5 years ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated last year
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Advanced metagenomic Sequence Analysis in R☆15Updated 6 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆74Updated 8 years ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- Extract metagenome-assembled genomes (MAGs) from metagenomic data using Hi-C.☆23Updated last week
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated 2 years ago