Code for nanopore paper
☆33Jun 26, 2015Updated 10 years ago
Alternatives and similar repositories for nanopore-paper-analysis
Users that are interested in nanopore-paper-analysis are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Experimental pipeline for correcting nanopore reads☆39May 23, 2017Updated 8 years ago
- Various scripts and recipes for working with nanopore data☆35Apr 17, 2016Updated 9 years ago
- Find all significant local alignments between reads☆141Jul 3, 2024Updated last year
- Real time data analysis tools for the minION sequencing platform.☆30Apr 12, 2022Updated 3 years ago
- Signal-level algorithms for MinION data☆595Aug 5, 2023Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Scaffolding genomes using synthetic long read clouds☆20Oct 11, 2016Updated 9 years ago
- a toolkit for working with Oxford nanopore data☆242Feb 6, 2023Updated 3 years ago
- GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…☆182Jul 30, 2019Updated 6 years ago
- Software for nanopore data analysis☆29Sep 10, 2014Updated 11 years ago
- Rapid Mapping-based Isoform Quantification from RNA-Seq Reads☆127Jun 9, 2022Updated 3 years ago
- Nanopore desc☆18Aug 22, 2016Updated 9 years ago
- MUMmer for HPC☆17Jan 7, 2013Updated 13 years ago
- TULIP - The Uncorrected Long read Itegration Pipeline☆27Jan 15, 2018Updated 8 years ago
- source code for HpcGridRunner☆16Aug 2, 2021Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Identifying repeats in high-throughput sequencing data☆16Apr 12, 2024Updated last year
- MUMmer3☆17Jan 12, 2022Updated 4 years ago
- Error correction for Oxford Nanopore data☆47May 29, 2021Updated 4 years ago
- ⛓ Long Interval Nucleotide K-mer Scaffolder☆73Mar 13, 2026Updated 2 weeks ago
- Scaffolding with assembly likelihood optimization☆21Dec 14, 2020Updated 5 years ago
- ☆18Mar 5, 2017Updated 9 years ago
- ☆26Oct 31, 2019Updated 6 years ago
- tools for error correction and working with long read data☆44Dec 1, 2014Updated 11 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Jan 28, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- A C++ header-only library for reading Oxford Nanopore Fast5 files☆53Jun 27, 2022Updated 3 years ago
- Minimalistic aligner which uses Minimap for input mapping locations and Edlib for fast bitvector alignment.☆11Jul 16, 2017Updated 8 years ago
- UCSC Nanopore group's software pipeline for reference-based sequence analysis☆55Oct 6, 2015Updated 10 years ago
- Benchmark MinION assembler pipelines and publish your results in a heartbeat!☆15Feb 11, 2020Updated 6 years ago
- Paired reads mapping on de Bruijn graph☆13Jan 15, 2019Updated 7 years ago
- FALCON: experimental PacBio diploid assembler -- Out-of-date -- Please use a binary release: https://github.com/PacificBiosciences/FALCON…☆205Mar 4, 2022Updated 4 years ago
- Gfapy: a flexible and extensible software library for handling sequence graphs in Python☆71Nov 13, 2025Updated 4 months ago
- An Oxford Nanopore Basecaller☆70Sep 4, 2021Updated 4 years ago
- [IMPORTANT: not for real data analysis, only for algorithm evaluation] fast and accurate alignment tool for PacBio and Nanopore long read…☆125Sep 10, 2018Updated 7 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- GraphSNP: Using graph approach to investigate outbreak cluster and transmission in a web browser☆12Oct 5, 2025Updated 5 months ago
- Population genetics analysis on VG☆17Apr 22, 2021Updated 4 years ago
- Software for Nanopore Analysis☆10Mar 14, 2018Updated 8 years ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆47May 27, 2022Updated 3 years ago
- Read nanopore sequence reads in real-time☆14Feb 9, 2017Updated 9 years ago
- A collection of plots for long read sequencing FastQ files from devices like Oxford Nanopore's MinION and PromethION.☆12Feb 14, 2023Updated 3 years ago
- PanGenomePipeline☆16Apr 10, 2024Updated last year