jts / nanopore-paper-analysis
Code for nanopore paper
☆33Updated 9 years ago
Alternatives and similar repositories for nanopore-paper-analysis:
Users that are interested in nanopore-paper-analysis are comparing it to the libraries listed below
- Various scripts and recipes for working with nanopore data☆34Updated 8 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Experimental pipeline for correcting nanopore reads☆39Updated 7 years ago
- Scripts and programs for the Holt Lab's MinION desktop☆32Updated 4 years ago
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆30Updated 4 years ago
- Remove lambda phage reads from a fastq file☆28Updated 2 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆56Updated 4 years ago
- An easy way to run BioNano genomic analysis☆27Updated 3 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 6 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 4 years ago
- Pan-Genomic Matching Statistics☆48Updated 9 months ago
- Scripts for implementing read until and other examples.☆31Updated 4 years ago
- InterARTIC - An interactive local web application for viral whole genome sequencing utilising the artic network pipelines..☆30Updated last year
- Exact Tandem Repeat Finder (not a TRF replacement)☆47Updated 5 years ago
- UCSC Nanopore☆43Updated 5 years ago
- Extract metagenome-assembled genomes (MAGs) from metagenomic data using Hi-C.☆23Updated 11 months ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 2 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 2 years ago
- catalog for long-read sequencing tools☆32Updated last year
- Tools for detecting DNA modifications from single molecule, real-time sequencing data☆22Updated 2 years ago
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated 2 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆65Updated 2 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆74Updated 8 years ago
- A method of assessing sequence complexity based on kmer frequencies☆30Updated 6 years ago
- Using kallisto for metagenomic analysis☆50Updated 8 years ago
- ☆52Updated 3 years ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- Find Unique genomic Regions☆29Updated last week
- Assembly by Reduced Complexity (ARC)☆41Updated 8 years ago