raphael-group / magi
A web application from the Raphael Lab for mutation annotation and genome interpretation.
☆20Updated 7 years ago
Alternatives and similar repositories for magi:
Users that are interested in magi are comparing it to the libraries listed below
- Distinguishing between generic and experiment-specific gene expression signals.☆12Updated 2 years ago
- qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python☆21Updated last year
- Community-maintained list of resources that the CI4CC organization and the larger cancer informatics community have found useful or are d…☆22Updated 6 years ago
- R function to plot high quality, elegant heatmap using 'ggplot2' graphics . Some of the important features of this package are, colorin…☆11Updated 8 years ago
- Class materials for the NIH HPC snakemake class☆16Updated 6 months ago
- Materials for GCB535 at Penn.☆20Updated 5 years ago
- Utilities for analyzing mutations and neoepitopes in patient cohorts☆20Updated 6 years ago
- Javascript library for visualizing genomics data with D3.☆19Updated 8 years ago
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- ☆12Updated 8 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated 10 months ago
- NExt generation Analysis Toolbox☆14Updated 9 years ago
- Railroadtracks is a Python package to handle connected computation steps for DNA and RNA Seq.☆14Updated 9 years ago
- Curated collection of open-source bioinformatics tools☆28Updated 6 years ago
- A python script used to annotate genomic intervals.☆18Updated 4 years ago
- Scripts for reproducing analyses of large RNA-seq datasets☆15Updated 5 years ago
- Benchmarks for RNA-seq quantification pipelines☆8Updated 5 years ago
- Modular blocks to build Snakemake workflows for reproducible NGS analyses☆22Updated 5 years ago
- A server for maintaining high-throughput sequencing QC data☆13Updated last year
- Training material for intermediate R / Bioconductor courses☆17Updated 2 years ago
- [DEPRECATED] An R package for Google Genomics API queries.☆45Updated 2 years ago
- Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …☆24Updated 7 years ago
- The vignette provided has a basic sketch of the steps we interactively will go through to build a package with devtools, explains version…☆11Updated 4 years ago
- Integrative visualization of multiple omic datasets onto KEGG pathways.☆11Updated 3 years ago
- Building the constrained coding regions (CCR) model☆16Updated 6 years ago
- ☆28Updated 6 years ago
- MuSiCa - Mutational Signatures in Cancer☆23Updated last year
- iDEP: integrated Differential Expression & Pathway analysis☆15Updated 6 years ago
- ☆12Updated 6 years ago
- Easily run WDL workflows on GCP☆13Updated 3 years ago