Alternatives and similar repositories for DOQTL

Users that are interested in DOQTL are comparing it to the libraries listed below

• StoreyLab / edge
  R package for identifying differentially expressed genes from genome-wide gene expression profiling studies.
  ☆21Updated 6 years ago
• StoreyLab / biobroom
  Tidy up computational biology objects
  ☆49Updated 6 years ago
• compbiomed / celda
  Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data
  ☆48Updated 6 years ago
• drostlab / metablastr
  Seamless Integration of BLAST Sequence Searches in R
  ☆31Updated last year
• Bioconductor / TENxBrainAnalysis
  R scripts for analyzing the 1.3 million brain cell data set from 10X Genomics
  ☆12Updated 2 years ago
• calico / impulse
  Fit phenomenological sigmoid and impulse curves with priors to improve interpretability
  ☆10Updated last year
• shaunpwilkinson / aphid
  Analysis with Profile Hidden Markov Models
  ☆22Updated last year
• cytoscape / RCy3
  New version of RCy3, redesigned and collaboratively maintained by Cytoscape developer community
  ☆52Updated last month
• BgeeDB / BgeeDB_R
  Source code of the R packge BgeeDB to use data from the Bgee database
  ☆16Updated 6 months ago
• carpentries-incubator / bioc-project
  Introduction to the Bioconductor project
  ☆18Updated this week
• RGLab / ggcyto
  Visualize Cytometry data with ggplot2
  ☆59Updated last month
• Bioconductor / BuildABiocWorkshop
  Template for building a bioconductor workshop package using github actions
  ☆20Updated last month
• greenelab / onboarding
  Onboarding materials for the Greene Lab
  ☆31Updated this week
• cozygene / refactor
  ☆25Updated 6 years ago
• anhtr / HPAanalyze
  A Bioconductor package to retrieve and analyze data from the Human Protein Atlas
  ☆37Updated 2 months ago
• Bioconductor / BiocParallel
  Bioconductor facilities for parallel evaluation
  ☆68Updated 3 weeks ago
• areyesq89 / SummarizedBenchmark
  SummarizedBenchmark defines a flexible framework for benchmarking computational methods in R.
  ☆15Updated 3 years ago
• BaderLab / EnrichmentMapApp
  The EnrichmentMap Cytoscape App allows you to visualize the results of gene-set enrichment as a network.
  ☆35Updated 10 months ago
• omicsCore / SEQprocess
  SEQprocess: a modularized and customizable pipeline framework for NGS processing in R package
  ☆17Updated 5 years ago
• QuantGen / BGData
  A Suite of Packages for Analysis of Big Genomic Data
  ☆34Updated 6 months ago
• wurst-theke / ButchR
  ☆13Updated 2 years ago
• price0416 / DEvis
  DEvis: an R package for aggregation and visualization of differential expression data
  ☆20Updated 4 years ago
• waldronlab / cBioPortalData
  Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment
  ☆33Updated 3 weeks ago
• tidyomics / tidy-genomics-talk
  ☆17Updated last year
• stephens999 / ashr
  An R package for adaptive shrinkage
  ☆84Updated 2 weeks ago
• csoneson / iCOBRA
  Interactive benchmarking of ranking and assignment methods
  ☆16Updated 3 weeks ago
• LTLA / basilisk
  Clone of the Bioconductor repository for the basilisk package.
  ☆28Updated 2 months ago
• QTCAT / qtcat
  Quantitative Trait Cluster Association Test in R
  ☆25Updated 4 years ago
• GSEA-MSigDB / gsea-desktop
  Gene Set Enrichment Analysis (GSEA) is a computational method that determines whether an a priori defined set of genes shows statisticall…
  ☆37Updated 5 months ago
• ropensci / tidyqpcr
  quantitative PCR analysis in the tidyverse
  ☆53Updated last year