swoodhouse / SCNS-Toolkit
Single cell network synthesis toolkit
☆23Updated 4 years ago
Alternatives and similar repositories for SCNS-Toolkit:
Users that are interested in SCNS-Toolkit are comparing it to the libraries listed below
- An interface for Nested Stochastic Block Model for single cell analysis☆32Updated this week
- post-clustering differential expression test☆35Updated 5 years ago
- Regulatory networks with Direct Information☆16Updated 5 years ago
- ☆20Updated last year
- Beta-Poisson model for single-cell RNA-seq data analyses☆16Updated 6 years ago
- ☆19Updated 7 years ago
- Dimensionality reduction for single cell RNA-seq data☆35Updated 5 years ago
- Descriptive probabilistic marker gene approach to single-cell pseudotime inference☆28Updated 5 years ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 6 years ago
- Probabilistic gene expression barcodes for cell type annotation☆25Updated 2 years ago
- Calibrate and compare methods for denoising single-cell RNA-seq data☆2Updated 4 years ago
- Code used for the single-cell RNA-Seq batch effects paper☆10Updated 7 years ago
- Population balance analysis☆44Updated 5 years ago
- Inference of switch-like differential expression along single-cell trajectories☆19Updated 7 years ago
- COMET Single-Cell Marker Detection tool☆31Updated 2 years ago
- Single cell interactive plotting tools☆23Updated 4 years ago
- Code for reproducing results from the paper "Modular and efficient pre-processing of single-cell RNA-seq data"☆23Updated 4 years ago
- A R package for Grade of Membership model and Visualization of counts data:☆31Updated 4 years ago
- ☆28Updated 2 years ago
- Code and manuscript files for Aaron and Karsten's deconvolution paper.☆16Updated 6 years ago
- A set of tools for accurate quantitation of single-cell allele-specific expression☆12Updated 2 years ago
- easy access to benchmark datasets☆50Updated 6 years ago
- Normalization for single cell RNA-seq data☆9Updated 2 years ago
- ☆10Updated 7 years ago
- A toolking for cell type hierarchies: marker selection & consistent classification☆21Updated last year
- An R package for running cell-based models☆8Updated 5 years ago
- ☆16Updated 6 years ago
- Variance stabilizing transformation for Gamma Poisson distributed data☆21Updated last year
- Reconstruct the lineage topology of a scRNA-seq differentiation dataset.☆18Updated 4 years ago
- kallisto index tag extractor☆20Updated 5 years ago