Single cell network synthesis toolkit
☆23Feb 15, 2021Updated 5 years ago
Alternatives and similar repositories for SCNS-Toolkit
Users that are interested in SCNS-Toolkit are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆15Nov 9, 2018Updated 7 years ago
- My notes/usage examples for various Bioconductor packages☆15Jan 9, 2017Updated 9 years ago
- Core utilities for single-cell RNA-seq☆13Jun 16, 2026Updated last month
- Telomerecat: The telomere computational analysis tool☆14Oct 9, 2020Updated 5 years ago
- bradner lab computation pipeline scripts☆54Aug 22, 2025Updated 11 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆13Feb 16, 2019Updated 7 years ago
- AR1MA1 - VBEM reverse engineering GRNs method☆11Sep 26, 2019Updated 6 years ago
- Pipeline for Universal Mapping of ATAC-seq☆27Sep 23, 2025Updated 10 months ago
- Isoform-level expression patterns in single-cell RNA-sequencing data☆12Apr 20, 2023Updated 3 years ago
- SINCERITIES is a tool for inferring gene regulatory networks from time-stamped cross-sectional single cell transcriptional expression pro…☆15Oct 16, 2017Updated 8 years ago
- Training material for intermediate R / Bioconductor courses☆17Mar 15, 2023Updated 3 years ago
- DNA and RNA variant calling pipelines with HLA typing and Neoantigen predictions☆12Jul 8, 2021Updated 5 years ago
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆23Dec 12, 2018Updated 7 years ago
- Bioconductor2017 workshop - Analysis of single-cell RNA-seq data: Normalization, dimensionality reduction, clustering, and lineage infere…☆11Aug 4, 2017Updated 8 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆30Jan 6, 2021Updated 5 years ago
- Materials for GCB535 at Penn.☆21Apr 19, 2019Updated 7 years ago
- Git Repo for simulating Boolean Models☆40Nov 7, 2025Updated 8 months ago
- ☆13Jun 24, 2016Updated 10 years ago
- An end-to-end computational pipeline for large Perturb-seq screens☆15Updated this week
- Subsampling of high-throughput sequencing count data☆20May 10, 2019Updated 7 years ago
- A python package for simulation and analysis of dynamic Boolean network models☆11Jan 23, 2019Updated 7 years ago
- Descriptive probabilistic marker gene approach to single-cell pseudotime inference☆31Nov 29, 2019Updated 6 years ago
- An implementation of MNN (Mutual Nearest Neighbors) correct in python.☆77Jan 9, 2023Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Tutorial for the analysis of scRNA-seq data in R☆18Aug 28, 2018Updated 7 years ago
- Downstream analysis script for sci-fate (TF-gene linkage analysis / cell linkage analysis)☆24Jan 22, 2020Updated 6 years ago
- Compare molecular structures after energy minimization in various force fields.☆10Aug 22, 2020Updated 5 years ago
- Ordering gene-expression and functional events in single-cell experiments☆33Jul 6, 2026Updated 3 weeks ago
- Collection of analysis methods for small count data generated by rafalab members (the methods, not the data).☆24Jul 10, 2024Updated 2 years ago
- Prediction of Potential Inhibitors for Targets(From ChEMBL), Based on Tensorflow.☆15May 5, 2018Updated 8 years ago
- Detection of super-enhancers in cancer data☆21Apr 10, 2023Updated 3 years ago
- Source code and data supporting "Evaluating measures of association for single-cell transcriptomics"☆17Feb 25, 2019Updated 7 years ago
- SigMa is a probabilistic model for the sequential dependencies of mutation signatures☆17Jul 27, 2019Updated 7 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- SCODE : an efficient regulatory network inference algorithm from single-cell RNA-Seq during differentiation☆50Dec 12, 2019Updated 6 years ago
- Run Picard on BAM files and collate 90 metrics into one file.☆40Sep 27, 2017Updated 8 years ago
- Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data☆110Jul 3, 2023Updated 3 years ago
- Reproducibility repository accompanying Wilk, Rustagi, Zhao, et al. "A single-cell atlas of the peripheral immune response to severe COVI…☆50Oct 22, 2021Updated 4 years ago
- ☆16Jan 2, 2024Updated 2 years ago
- Decomposition of heterogeneous DNA methylomes☆24Jul 10, 2024Updated 2 years ago
- Benchmarking pipeline for single-cell perturbation prediction tools☆34Jul 11, 2025Updated last year