Documentation for the cellxgene product
☆17Sep 13, 2022Updated 3 years ago
Alternatives and similar repositories for cellxgene-documentation
Users that are interested in cellxgene-documentation are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The data portal supporting the submission, exploration, and management of projects and datasets to cellxgene.☆91Updated this week
- ☆14Apr 17, 2025Updated last year
- Generate a spatial catalogue from multiplexed imaging data☆19Jun 12, 2025Updated last year
- cnv-seq with custom bugfix☆10Mar 23, 2013Updated 13 years ago
- Fast pairwise sequence alignment using SeqAn, in Python.☆13Mar 23, 2019Updated 7 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆15Nov 9, 2018Updated 7 years ago
- A tool to annotate human VCF files with PolyPhen2 effect measures☆10Dec 26, 2022Updated 3 years ago
- An interactive explorer for single-cell transcriptomics data☆780Updated this week
- Resources and documentation for UK Biobank to OMOP CDM v5.3.1 conversion☆10Oct 20, 2020Updated 5 years ago
- Scripts used to perform analyses in Rice et al. (2023)☆16Dec 28, 2023Updated 2 years ago
- An example of bundling webR as part of an application using webpack.☆14Nov 3, 2023Updated 2 years ago
- pipeline for dog WGS alignment☆15Jun 27, 2023Updated 3 years ago
- Minerva Story is an image viewer that is designed specifically to make it easy for non-expert users to interact with complex tissue image…☆58May 8, 2024Updated 2 years ago
- Code accompanying the manuscript "Tissue Schematics map the specialization of immune tissue motifs and their appropriation by tumors"☆13Mar 3, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Single cell type annotation guided by cell atlases, with freedom to be queer☆25Jul 25, 2022Updated 3 years ago
- Tutorials for multimodal omics data analysis☆20Feb 28, 2025Updated last year
- Convert between AnnData and SingleCellExperiment☆151Updated this week
- Tool to identify concept in the OMOP Genomic vocabulary from VCF and other files as well as HGVS notations☆15May 6, 2024Updated 2 years ago
- Demo App: https://rinpharma.shinyapps.io/clinsight/ Development version website: https://openpharma.github.io/clinsight/dev☆13Mar 3, 2026Updated 4 months ago
- Creating analytic cohorts from AACR Project GENIE BPC clinically annotated genomic data☆10Updated this week
- A pipeline to rapidly detect exogenous DNA integration sites using DNA or RNA paired-end sequencing data☆12Apr 25, 2023Updated 3 years ago
- Hephaestus - ETL and ML tools for OHDSI - OMOP CDM☆13Sep 18, 2025Updated 9 months ago
- R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in c…☆17Sep 26, 2021Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Multi-agent LLM driven cell type annotation for single-cell RNA-Seq data☆38Apr 30, 2026Updated 2 months ago
- general repo that holds all analysis and figures for the thymus spatial atlas by Yayon, Kedlian, Boehme, Radtke and many more!☆12Nov 20, 2024Updated last year
- ☆14Jun 21, 2021Updated 5 years ago
- Combined de novo transcriptome assembly - multiple assemblers - multiple parameters☆18Dec 1, 2021Updated 4 years ago
- A variational autoencoder-based approach for copy number variation inference using single-cell transcriptomics☆13Mar 11, 2024Updated 2 years ago
- Converts snpeff annotations into MAF☆11Aug 23, 2024Updated last year
- This package helps wrangle the clinical data in IBD Plexus. IBD Plexus is a data exchange platform designed to accelerate research toward…☆20Jun 11, 2026Updated 3 weeks ago
- sharing interactive single cell gene expression visualizations from Seurat☆13May 18, 2023Updated 3 years ago
- The scripts used for analyzing JAX mouse dataset☆26Oct 24, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆14Apr 4, 2023Updated 3 years ago
- High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations☆55Aug 11, 2025Updated 10 months ago
- ☆17Oct 4, 2025Updated 9 months ago
- Incremental kernel PCA☆31Mar 13, 2021Updated 5 years ago
- Build predicted cell-cell interaction networks from single-cell data.☆10Jan 31, 2023Updated 3 years ago
- Porting of Protein Activity and Pathway Inference to single cell and Python.☆15Jun 12, 2026Updated 3 weeks ago
- Template package for Reactive data app using R, plumber, and react☆15Oct 28, 2018Updated 7 years ago