A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.
☆99Apr 9, 2023Updated 3 years ago
Alternatives and similar repositories for clusterflow
Users that are interested in clusterflow are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A web based tool to manage and automate the processing of publicly available datasets.☆39Mar 16, 2021Updated 5 years ago
- See the main fork of this repository here >>>☆39Apr 4, 2026Updated last month
- RNA mapping pipeline☆18Jun 3, 2018Updated 7 years ago
- Combine reference and assembled transcriptomes for RNA-Seq analysis☆24Feb 12, 2020Updated 6 years ago
- Simple tokenised template system for SGE☆10Mar 1, 2023Updated 3 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Prepare Sailfish and Salmon output for downstream analysis☆41Jun 6, 2019Updated 6 years ago
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,450May 14, 2026Updated last week
- SeqMonk NGS visualisation and analysis tool☆50Mar 31, 2026Updated last month
- Mapped QC analysis program☆44May 16, 2018Updated 8 years ago
- Web application to collect and visualise data across multiple MultiQC runs.☆94Dec 13, 2024Updated last year
- Expectation-Maximization algorithm for Allele-Specific Expression☆22May 9, 2023Updated 3 years ago
- Transcript assembly tool using multiple change-point inference to improve 3'UTR annotation☆13Dec 2, 2022Updated 3 years ago
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Dec 13, 2019Updated 6 years ago
- Command line tool for Wave containers provisioning service☆19May 13, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- An efficient FASTQ manipulation suite☆139Jan 27, 2020Updated 6 years ago
- A tool for running bioinformatics workflows locally or in the cloud.☆30Dec 13, 2019Updated 6 years ago
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆25Apr 21, 2021Updated 5 years ago
- Bpipe - a tool for running and managing bioinformatics pipelines☆241May 3, 2026Updated 2 weeks ago
- Allele-specific alignment sorting☆63Jan 7, 2023Updated 3 years ago
- GFF3 format with miRNA and isomiR information from sequencing data☆17Aug 5, 2019Updated 6 years ago
- de novo targeted gene assembly☆22Apr 16, 2021Updated 5 years ago
- Process Illumina instrument data into SAM/BAM/CRAM files.☆10Mar 9, 2026Updated 2 months ago
- BAM Statistics, Feature Counting and Annotation☆154May 8, 2026Updated last week
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- An R package for creating 3D barplots☆12Jan 8, 2023Updated 3 years ago
- Analyze antibody repertoires and discover new V genes from high-throughput sequencing reads☆16Dec 5, 2023Updated 2 years ago
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆51Apr 9, 2021Updated 5 years ago
- ☆57Mar 31, 2020Updated 6 years ago
- Analysis Framework for Biological Data from High Throughput Experiments☆34Aug 24, 2016Updated 9 years ago
- fastq quality assessment and filtering tool☆17Dec 10, 2022Updated 3 years ago
- Tool for the Automation of Cleanup and Analyses: tools for projects and data management at NGI Stockholm☆14Apr 29, 2026Updated 3 weeks ago
- Config files used to define parameters specific to compute environments at different Institutions☆109Updated this week
- Assembly by Reduced Complexity (ARC)☆41Mar 29, 2016Updated 10 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Tools to process and analyze deep sequencing data.☆760Jul 23, 2025Updated 9 months ago
- Web application to explore the Sequence Read Archive.☆223Jul 17, 2025Updated 10 months ago
- Chromatin domains bursting with flavor☆12Dec 29, 2019Updated 6 years ago
- ☆12Jul 30, 2022Updated 3 years ago
- genetic variant expressions, annotation, and filtering for great good.☆274May 12, 2026Updated last week
- Transcript quantification import with automatic metadata detection☆72May 4, 2026Updated 2 weeks ago
- Lightweight workflows in bioinformatics:☆24Nov 5, 2014Updated 11 years ago