A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.
☆99Apr 9, 2023Updated 3 years ago
Alternatives and similar repositories for clusterflow
Users that are interested in clusterflow are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A web based tool to manage and automate the processing of publicly available datasets.☆40Mar 16, 2021Updated 5 years ago
- See the main fork of this repository here >>>☆39Jun 16, 2026Updated last month
- Simple tokenised template system for SGE☆10Mar 1, 2023Updated 3 years ago
- Combine reference and assembled transcriptomes for RNA-Seq analysis☆24Feb 12, 2020Updated 6 years ago
- RNA mapping pipeline☆19Jun 3, 2018Updated 8 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Prepare Sailfish and Salmon output for downstream analysis☆41Jun 6, 2019Updated 7 years ago
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,484Aug 2, 2026Updated last week
- SeqMonk NGS visualisation and analysis tool☆51Mar 31, 2026Updated 4 months ago
- Mapped QC analysis program☆44May 16, 2018Updated 8 years ago
- Web application to collect and visualise data across multiple MultiQC runs.☆95Dec 13, 2024Updated last year
- Expectation-Maximization algorithm for Allele-Specific Expression☆22May 9, 2023Updated 3 years ago
- Transcript assembly tool using multiple change-point inference to improve 3'UTR annotation☆13Dec 2, 2022Updated 3 years ago
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Dec 13, 2019Updated 6 years ago
- An efficient FASTQ manipulation suite☆139Jan 27, 2020Updated 6 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A tool for running bioinformatics workflows locally or in the cloud.☆30Dec 13, 2019Updated 6 years ago
- Chromatin domains bursting with flavor☆12Dec 29, 2019Updated 6 years ago
- de novo targeted gene assembly☆22Apr 16, 2021Updated 5 years ago
- Bpipe - a tool for running and managing bioinformatics pipelines☆241Jul 22, 2026Updated 2 weeks ago
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆25Apr 21, 2021Updated 5 years ago
- Allele-specific alignment sorting☆62Jan 7, 2023Updated 3 years ago
- GFF3 format with miRNA and isomiR information from sequencing data☆17Aug 5, 2019Updated 7 years ago
- Process Illumina instrument data into SAM/BAM/CRAM files.☆10Jul 6, 2026Updated last month
- BAM Statistics, Feature Counting and Annotation☆155Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- An R package for creating 3D barplots☆12Jan 8, 2023Updated 3 years ago
- Analyze antibody repertoires and discover new V genes from high-throughput sequencing reads☆16Dec 5, 2023Updated 2 years ago
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆51Apr 9, 2021Updated 5 years ago
- ☆56Mar 31, 2020Updated 6 years ago
- A workflow for creating small NGS test data sets, useful for continuous integration.☆23Aug 15, 2024Updated last year
- Tool for the Automation of Cleanup and Analyses: tools for projects and data management at NGI Stockholm☆14Jun 26, 2026Updated last month
- fastq quality assessment and filtering tool☆17Dec 10, 2022Updated 3 years ago
- Web application to explore the Sequence Read Archive.☆224Jul 17, 2025Updated last year
- Config files used to define parameters specific to compute environments at different Institutions☆110Updated this week
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Assembly by Reduced Complexity (ARC)☆41Mar 29, 2016Updated 10 years ago
- Tools to process and analyze deep sequencing data.☆762Updated this week
- genetic variant expressions, annotation, and filtering for great good.☆275May 12, 2026Updated 2 months ago
- ☆12Jul 30, 2022Updated 4 years ago
- Transcript quantification import with automatic metadata detection☆72Jul 20, 2026Updated 3 weeks ago
- Do not use - please refer to our newest code: https://github.com/cgat-developers/cgat-apps☆123Nov 8, 2018Updated 7 years ago
- Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.☆51Aug 20, 2018Updated 7 years ago