ewels / clusterflowLinks
A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.
☆98Updated 2 years ago
Alternatives and similar repositories for clusterflow
Users that are interested in clusterflow are comparing it to the libraries listed below
Sorting:
- Tools for next-generation sequencing analysis☆89Updated 6 years ago
- ☆63Updated 9 years ago
- List of tools and resources related to the 10x Genomics GEMCode/Chromium system☆85Updated 6 years ago
- NextSeq specific bcl2fastq2 wrapper.☆55Updated 4 years ago
- Do not use - please refer to our newest code: https://github.com/cgat-developers/cgat-apps☆124Updated 7 years ago
- conda recipes for genomic data☆84Updated 4 years ago
- ☆83Updated 3 years ago
- SeqMonk NGS visualisation and analysis tool☆50Updated last month
- Scripts, utilities and programs for genomic bioinformatics.☆83Updated last month
- EDGE is a highly adaptable bioinformatics platform that allows laboratories to quickly analyze and interpret genomic sequence data.☆76Updated 2 weeks ago
- Maximum likelihood demultiplexing☆50Updated 10 months ago
- A fast Python library for VCF files leveraging Cython for speed.☆52Updated 7 years ago
- An NGS read trimming tool that is specific, sensitive, and speedy. (production)☆126Updated 8 months ago
- Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.☆51Updated 7 years ago
- Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline☆57Updated 5 years ago
- See the main fork of this repository here >>>☆38Updated 7 months ago
- Toil workflows for common genomic pipelines☆33Updated 6 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- ☆78Updated 11 years ago
- Multi-sample somatic variant caller☆52Updated 3 years ago
- De novo transcriptome assembler for short reads☆64Updated 7 years ago
- Framework for integrated analysis and plotting of ChIP/RIP/RNA/*-seq data☆87Updated 5 years ago
- ☆96Updated 3 years ago
- Tools for early stage alignment file processing☆95Updated 6 years ago
- Genomic Interactive Visualization Engine☆146Updated 2 years ago
- Method for detecting STR expansions from short-read sequencing data☆63Updated 4 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- List of computational resources for analyzing microbial sequencing data.☆67Updated last month
- Documentation and description of AWS iGenomes S3 resource.☆119Updated last year
- Scalable RNA-seq analysis☆73Updated 4 years ago