ewels / clusterflow
A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.
☆97Updated 2 years ago
Alternatives and similar repositories for clusterflow:
Users that are interested in clusterflow are comparing it to the libraries listed below
- a wee tool for random access into BGZF files.☆84Updated 6 years ago
- conda recipes for genomic data☆85Updated 3 years ago
- Tools for next-generation sequencing analysis☆88Updated 5 years ago
- Framework for integrated analysis and plotting of ChIP/RIP/RNA/*-seq data☆87Updated 4 years ago
- Scripts, utilities and programs for genomic bioinformatics.☆82Updated this week
- ☆62Updated 8 years ago
- ☆82Updated 6 years ago
- Fast spliced aligner with low memory requirements☆41Updated 9 years ago
- See the main fork of this repository here >>>☆38Updated last month
- Platypus Variant Caller☆108Updated 9 months ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆55Updated 7 years ago
- Scalable RNA-seq analysis☆73Updated 4 years ago
- small RNA analysis from NGS data☆37Updated 7 months ago
- Method for detecting STR expansions from short-read sequencing data☆62Updated 3 years ago
- De novo transcriptome assembler for short reads☆62Updated 7 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆48Updated 5 years ago
- Haplotype, isoform and gene level expression analysis using multi-mapping RNA-seq reads☆68Updated last year
- Collection of CGAT NGS Pipelines☆43Updated 6 years ago
- Fast fusion detection using kallisto☆80Updated 5 months ago
- Battenberg algorithm and associated implementation script☆52Updated 4 years ago
- integrated RNA-seq Analysis Pipeline☆84Updated 6 years ago
- Quality of RNA-Seq Toolset☆53Updated 6 years ago
- The Ensembl Variation Perl API and SQL schema☆28Updated this week
- De novo assembly based variant calling pipeline for Illumina short reads☆108Updated 4 years ago
- utilities for indexing and sequence extraction from FASTA files☆59Updated 3 years ago
- Do not use - please refer to our newest code: https://github.com/cgat-developers/cgat-apps☆124Updated 6 years ago
- Documentation and description of AWS iGenomes S3 resource.☆113Updated 4 months ago
- Genomic Interactive Visualization Engine☆145Updated 2 years ago
- SNV expectation maximisation based mutation calling algorithm aimed at detecting somatic mutations in paired (tumour/normal) cancer sampl…☆60Updated 5 months ago
- EDGE is a highly adaptable bioinformatics platform that allows laboratories to quickly analyze and interpret genomic sequence data.☆73Updated last month