smped / ngsReportsLinks
☆23Updated last week
Alternatives and similar repositories for ngsReports
Users that are interested in ngsReports are comparing it to the libraries listed below
Sorting:
- Code for differential splicing comparison paper (Soneson, Matthes, et al.)☆20Updated 9 years ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 6 months ago
- Filter and prioritize fusion calls☆20Updated 11 months ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- RNA-seq for Mendelian disease diagnostics: A hands-on tutorial through bioinformatic tools and workflows☆17Updated 3 years ago
- A small R package to make sequencing read coverage plots in R.☆39Updated 3 years ago
- Flexible Bayesian inference of mutational signatures☆36Updated 2 years ago
- Population-based detection of structural variation from High-Throughput Sequencing.☆32Updated 3 years ago
- a set of NGS pipelines☆24Updated this week
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- BrumiR: A toolkit for de novo discovery of microRNAs from sRNA-seq data.☆10Updated 3 years ago
- A command line tool to compute mapping statistics from a BAM file☆24Updated 3 years ago
- Bulk RNA-seq Data Processing, Quality Control, and Downstream Analysis Pipeline☆20Updated 8 months ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated 2 years ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- interactive plots for differential expression analysis☆34Updated 3 months ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project☆16Updated 2 years ago
- Parse samtools pileup file to get how many bases and what kind of bases are called☆14Updated last year
- 📊Evaluating, filtering, comparing, and visualising VCF☆28Updated 2 years ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 5 months ago
- Sashimi plots for RNA-seq data using detected transcripts☆29Updated 6 months ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- Transposon Insertion Finder - Detection of new TE insertions in NGS data☆20Updated 4 months ago
- DRAGEN Tumor/Normal workflow post-processing☆22Updated 2 years ago
- RNAseq analysis with Hisat2, stringtie, and ballgown☆17Updated 6 years ago
- Integrative analysis of structural variations.☆40Updated last year
- Differential gene expression analysis and pathway analysis of RNAseq data☆32Updated 2 months ago
- Mapped QC analysis program☆44Updated 7 years ago