Alternatives and similar repositories for ngsReports

Users that are interested in ngsReports are comparing it to the libraries listed below

• griffithlab / VAtools
  A set of tools to annotate VCF files with expression and readcount data
  ☆29Updated 9 months ago
• churchill-lab / emase
  Expectation-Maximization algorithm for Allele-Specific Expression
  ☆21Updated 2 years ago
• d3b-center / annoFuse
  Filter and prioritize fusion calls
  ☆20Updated last year
• gzhmat / ShinyCNV
  a Shiny/R application to view and annotate copy number variations
  ☆28Updated 2 years ago
• jmw86069 / splicejam
  Sashimi plots for RNA-seq data using detected transcripts
  ☆29Updated 8 months ago
• umccr / umccrise
  DRAGEN Tumor/Normal workflow post-processing
  ☆24Updated 2 years ago
• imbforge / NGSpipe2go
  a set of NGS pipelines
  ☆24Updated last week
• jmonlong / PopSV
  Population-based detection of structural variation from High-Throughput Sequencing.
  ☆33Updated 3 years ago
• czc / nb_distribution
  novoBreak: local assembly for breakpoint detection in cancer genomes
  ☆25Updated 7 years ago
• smshuai / DriverPower
  DriverPower
  ☆26Updated 10 months ago
• bartongroup / RATS
  Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.
  ☆34Updated 3 years ago
• mritchielab / GlimmaV2
  interactive plots for differential expression analysis
  ☆34Updated 5 months ago
• kauralasoo / wiggleplotr
  A small R package to make sequencing read coverage plots in R.
  ☆40Updated last month
• kgori / sigfit
  Flexible Bayesian inference of mutational signatures
  ☆37Updated 2 years ago
• Kuanhao-Chao / RNASeqR
  📊 An R package of RNA-seq workflow
  ☆15Updated 3 years ago
• YaoLab-Bioinfo / intansv
  Integrative analysis of structural variations.
  ☆40Updated last year
• BIMSBbioinfo / pigx_rnaseq
  Bulk RNA-seq Data Processing, Quality Control, and Downstream Analysis Pipeline
  ☆20Updated 11 months ago
• Kingsford-Group / squid
  SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data
  ☆42Updated 3 years ago
• markrobinsonuzh / diff_splice_paper
  Code for differential splicing comparison paper (Soneson, Matthes, et al.)
  ☆20Updated 9 years ago
• MorrellLAB / sequence_handling
  A series of scripts to automate sequence workflows
  ☆19Updated 6 months ago
• btmonier / vidger
  Make rapid visualizations of RNA-seq data in R
  ☆19Updated 2 months ago
• itsvenu / ALPS
  AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project
  ☆16Updated 2 years ago
• IrinaVKuznetsova / CirGO
  ☆21Updated last year
• nuno-agostinho / psichomics
  Interactive R package to quantify, analyse and visualise alternative splicing
  ☆37Updated last week
• databio / GenomicDistributions
  Calculate and plot distributions of genomic ranges
  ☆26Updated 7 months ago
• mdozmorov / RNA-seq
  RNA-seq analysis scripts
  ☆15Updated last month
• gagneurlab / RNAseq-ASHG
  RNA-seq for Mendelian disease diagnostics: A hands-on tutorial through bioinformatic tools and workflows
  ☆17Updated 3 years ago
• Oshlack / MINTIE
  Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.
  ☆36Updated last year
• mrcuizhe / interacCircos
  An R Package based on JavaScript libraries for Visualization of Interactive Circos Plot
  ☆28Updated 3 years ago
• sanjaynagi / rna-seq-pop
  Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data
  ☆18Updated 8 months ago