waldronlab / GSEABenchmarkeRView external linksLinks
Reproducible GSEA Benchmarking
☆14Oct 30, 2025Updated 3 months ago
Alternatives and similar repositories for GSEABenchmarkeR
Users that are interested in GSEABenchmarkeR are comparing it to the libraries listed below
Sorting:
- Seamlessly integrate R packages into Python.☆21Apr 12, 2023Updated 2 years ago
- Read RDS files, in Python☆25Jan 26, 2026Updated 2 weeks ago
- HSCI/Catalyst Single-cell RNA-Seq Workshop☆19Apr 14, 2019Updated 6 years ago
- R as a backend for web apps.☆10Mar 7, 2018Updated 7 years ago
- ☆11Dec 17, 2025Updated last month
- Gene Set Enrichment Analysis in Python☆11Oct 26, 2018Updated 7 years ago
- home of the bear's lair☆10May 19, 2017Updated 8 years ago
- renders a KEGGML file and displays a KEGG pathway☆10Jul 14, 2016Updated 9 years ago
- Open Targets Genetics UI☆15Jan 31, 2025Updated last year
- ☆11Sep 5, 2018Updated 7 years ago
- This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.☆11Jan 21, 2024Updated 2 years ago
- Seamless navigation through combined results of set-based and network-based enrichment analysis☆22Sep 14, 2025Updated 4 months ago
- ☆29Mar 16, 2023Updated 2 years ago
- A Highlighting Library For R☆11Nov 16, 2016Updated 9 years ago
- My Library of R Helpers☆13Aug 3, 2020Updated 5 years ago
- integrative pathway analysis with modern PCA methodology and gene selection☆11Jun 29, 2023Updated 2 years ago
- Faster manipulation of dendrogram objects in R.☆15May 22, 2015Updated 10 years ago
- Creating Debian Packages from CRAN Sources☆12Jul 1, 2020Updated 5 years ago
- Provides classes for working with sets☆11Dec 19, 2025Updated last month
- Analysis steps to calculate RNA Velocity in Bulk RNA-Seq samples. Step by Step Guide.☆17Jan 7, 2020Updated 6 years ago
- Scripts for generating integrated dataset from publically available data sources to evaluate known genetic associations evidence of varyi…☆11May 5, 2020Updated 5 years ago
- An alignment and analysis pipeline for Ribosome Profiling and RNA-seq data☆13Jul 2, 2024Updated last year
- Glimma R package☆50Sep 2, 2024Updated last year
- SignalingProfiler is a pipeline that builds signaling networks to cellular phenotypes from multiomics data.☆15Oct 17, 2025Updated 3 months ago
- Mini installer that contains everything that's necessary to run rhumba☆14May 18, 2021Updated 4 years ago
- S4 Generic Summary Statistic Functions that Operate on Matrix-Like Objects☆12Oct 30, 2025Updated 3 months ago
- Build and check R packages using Travis or other CIs☆55Jun 12, 2020Updated 5 years ago
- A GenePattern module for running the ssGSEA method☆14Mar 3, 2025Updated 11 months ago
- The KEGGgraph package to parse KEGG pathways in R into graph objects☆14Apr 14, 2025Updated 10 months ago
- DSL for dynamic programming☆17Dec 11, 2019Updated 6 years ago
- The blog of tidyomics☆14Jul 12, 2025Updated 7 months ago
- ☆16Dec 11, 2018Updated 7 years ago
- GO-PCA: An Unsupervised Method to Explore Gene Expression Data Using Prior Knowledge☆14Sep 13, 2017Updated 8 years ago
- Modular & interactive analysis components for bioinformatics☆18Dec 9, 2025Updated 2 months ago
- Helper script for bioconductor/bioconductor_docker☆13Updated this week
- Elastic, reproducible, and reusable genomic data science tools from R backed by cloud resources☆34Oct 27, 2021Updated 4 years ago
- Introduction to the Bioconductor project☆19Oct 17, 2025Updated 3 months ago
- XL-mHG: A Semiparametric Test for Enrichment in Ranked Lists.☆13Jan 19, 2023Updated 3 years ago
- An introduction to matrix factorization and PCA and SVD.☆41Sep 28, 2023Updated 2 years ago