waldronlab / GSEABenchmarkeR
Reproducible GSEA Benchmarking
☆13Updated 4 months ago
Alternatives and similar repositories for GSEABenchmarkeR:
Users that are interested in GSEABenchmarkeR are comparing it to the libraries listed below
- integrative pathway analysis with modern PCA methodology and gene selection☆11Updated last year
- This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.☆10Updated last year
- Template for building a bioconductor workshop package using github actions☆20Updated 8 months ago
- Seamless navigation through combined results of set-based and network-based enrichment analysis☆20Updated last week
- Source code of the R packge BgeeDB to use data from the Bgee database☆15Updated last month
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆44Updated 4 months ago
- A Grammar of Data Manipulation for Omics Data☆21Updated 4 years ago
- Clone of the Bioconductor repository for the basilisk package.☆27Updated last month
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Updated 5 years ago
- zero-inflated negative binomial gene expression in R☆20Updated 7 years ago
- Take command of your set enrichment analyses.☆21Updated last week
- iDEP: integrated Differential Expression & Pathway analysis☆15Updated 6 years ago
- Gene network analysis☆19Updated 2 years ago
- Assessing the increase in power from increasing read depth in a given RNA-Seq study☆13Updated 5 years ago
- Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment☆33Updated last week
- Deconvolution of seed effects from gene effects in large scale RNAi screens☆10Updated 6 years ago
- R package to wrap cBioPortal's API to pull data from public or private cBioPortal databases☆22Updated 3 months ago
- Modular package for generation of sets of ranges representing the null hypothesis. These can take the form of bootstrapped ranges (bootRa…☆27Updated last year
- A Shiny web server for interactive visualization and analysis of RNA-seq data☆22Updated 3 years ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆24Updated last year
- Foundation of vector-like and list-like containers in Bioconductor☆18Updated last month
- SummarizedBenchmark defines a flexible framework for benchmarking computational methods in R.☆15Updated 3 years ago
- Elastic, reproducible, and reusable genomic data science tools from R backed by cloud resources☆34Updated 3 years ago
- Interactive Differential Expression AnaLysis - DE made accessible and reproducible☆29Updated last week
- home of the bear's lair☆10Updated 7 years ago
- the manifesto, workshops and tutorials of the tidy transcriptomics☆12Updated 9 months ago
- Bioconductor package that makes BIG data pint-sized.☆21Updated last year
- Interactive benchmarking of ranking and assignment methods☆14Updated 2 months ago
- Repository for signature genes from Immune Cell Atlas☆18Updated 5 years ago
- The official repository of the Bioconductor 2019 Conference Workshops☆25Updated 2 years ago