ruolin / strawberry
A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)
☆23Updated 4 years ago
Alternatives and similar repositories for strawberry:
Users that are interested in strawberry are comparing it to the libraries listed below
- FREE Divergence Error-Correcting DNA Barcodes☆8Updated 6 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated 10 months ago
- Chromatin segmentation in R☆19Updated 7 years ago
- Transposon Insertion Finder - Detection of new TE insertions in NGS data☆20Updated 2 years ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Updated 6 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 7 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆38Updated last year
- ☆22Updated 2 weeks ago
- Functions to compare a SV call sets against a truth set.☆29Updated last year
- FermiKit small variant calls for public SGDP samples☆17Updated 8 years ago
- ☆21Updated 3 weeks ago
- fastq quality assessment and filtering tool☆18Updated 2 years ago
- Adapters for trimming☆30Updated 6 years ago
- interactive plots for differential expression analysis☆32Updated last month
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 9 years ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆15Updated 3 years ago
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆17Updated last month
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated last year
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated 9 months ago
- Useful tools for working with Salmon output☆37Updated 4 years ago
- ☆12Updated 4 months ago
- Personal diploid genome creation and coordinate conversion☆26Updated last month
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆28Updated 7 months ago
- a Shiny/R application to view and annotate copy number variations☆27Updated 2 years ago
- Pipeline for Phylostratigraphy☆13Updated 2 years ago
- ☆26Updated last month
- Exhaustive capture of biological variation in RNA-seq data through k-mer decomposition.☆15Updated 6 years ago
- ☆14Updated last year