ruolin / strawberryLinks
A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)
☆24Updated 4 years ago
Alternatives and similar repositories for strawberry
Users that are interested in strawberry are comparing it to the libraries listed below
Sorting:
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated 2 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated 2 years ago
- fastq quality assessment and filtering tool☆18Updated 3 years ago
- Population-based detection of structural variation from High-Throughput Sequencing.☆33Updated 3 years ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Updated 7 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 6 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆39Updated 2 years ago
- Transposon Insertion Finder - Detection of new TE insertions in NGS data☆20Updated 7 months ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- full taxonomer cython repository☆22Updated 6 years ago
- Bam Read Index - Extract alignments from a bam file by readname☆28Updated last year
- Chromatin segmentation in R☆19Updated 7 years ago
- ☆14Updated 4 months ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆25Updated 9 years ago
- Immuological gene typing and annotation for genome assembly☆38Updated 9 months ago
- Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters☆23Updated 6 years ago
- Prepare Sailfish and Salmon output for downstream analysis☆42Updated 6 years ago
- Unfazed by genomic variant phasing☆27Updated last year
- simple library for dealing with SAM cigar strings☆41Updated 4 years ago
- Ultra Fast NGS Data QC Tool☆28Updated 4 years ago
- Exhaustive capture of biological variation in RNA-seq data through k-mer decomposition.☆15Updated 7 years ago
- BigWig manpulation tools using libBigWig and htslib☆30Updated last year
- Reducing reference bias using multiple population reference genomes☆34Updated last year
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- Work for the tree sequence inference paper.☆23Updated 5 years ago
- v2.x of the microassembly based somatic variant caller☆23Updated 5 months ago
- FermiKit small variant calls for public SGDP samples☆17Updated 9 years ago
- Personal diploid genome creation and coordinate conversion☆30Updated 8 months ago