Magdoll / SQANTI2Links
SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3
☆38Updated 5 years ago
Alternatives and similar repositories for SQANTI2
Users that are interested in SQANTI2 are comparing it to the libraries listed below
Sorting:
- ENCODE long read RNA-seq pipeline☆50Updated 2 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆63Updated 11 months ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 11 months ago
- Error correction of ONT transcript reads☆58Updated 2 years ago
- Long-read Isoform Quantification and Analysis☆38Updated 6 months ago
- Tools for processing and analyzing structural variants.☆33Updated 10 years ago
- fusion transcript detection using long reads, leveraging ctat-minimap2 and FusionInspector☆22Updated this week
- QDNAseq package for Bioconductor☆52Updated last year
- SingleCell Nanopore sequencing data analysis☆61Updated 4 months ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 10 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆48Updated 5 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆50Updated 2 weeks ago
- A Python library to visualize and analyze long-read transcriptomes☆63Updated 5 months ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆48Updated 2 years ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 5 years ago
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆67Updated 3 weeks ago
- Comprehensive benchmark of structural variant callers☆47Updated 4 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆43Updated 3 months ago
- Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome☆69Updated last year
- Pipeline for annotating genomes using long read transcriptomics data with pinfish☆28Updated 4 years ago
- Algorithm to detect germline and de novo transposon insertions☆30Updated last month
- ☆51Updated 6 years ago
- ☆38Updated 2 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated 4 months ago
- Long read to rMATS☆32Updated 2 years ago
- A software for calculating telomere length☆71Updated 6 years ago
- ⛏ HLA predictions from NGS shotgun data☆54Updated 4 months ago
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆51Updated 4 years ago
- Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.☆27Updated 6 years ago
- CN-Learn☆30Updated 5 years ago