Alternatives and similar repositories for scrnapip

Users that are interested in scrnapip are comparing it to the libraries listed below

• MGI-tech-bioinformatics / DNBelab_C_Series_HT_scRNA-analysis-software
  The official pipeline for flexible and high-performance analysis of DNBelab C Serie single-cell data.
  ☆131Updated this week
• singleron-RD / CeleScope
  Single Cell Analysis Pipelines
  ☆114Updated this week
• bioinfo-ibms-pumc / SCSA
  SCSA: cell type annotation for single-cell RNA-seq data
  ☆94Updated 2 years ago
• liulab-dfci / RIMA_pipeline
  ☆89Updated 4 months ago
• dviraran / xCell
  Cell types enrichment analysis
  ☆206Updated last year
• 10XGenomics / loupeR
  Convert Seurat objects to 10x Genomics Loupe files.
  ☆147Updated 6 months ago
• TheHumphreysLab / plot1cell
  ☆120Updated 4 months ago
• sjdlabgroup / SAHMI
  ☆88Updated last year
• cellgeni / STARsolo
  wrapper scripts for convenient STARsolo processing of 10X and other scRNA-seq
  ☆75Updated 7 months ago
• CebolaLab / ATAC-seq
  Analysis pipeline for ATAC-seq data
  ☆83Updated 2 years ago
• rnakato / ShortCake
  A docker image for single-cell analysis
  ☆103Updated 2 months ago
• saezlab / dorothea
  R package to access DoRothEA's regulons
  ☆154Updated last year
• fl-yu / CUT-RUNTools-2.0
  CUT&RUN and CUT&Tag data processing and analysis
  ☆113Updated 10 months ago
• sajuukLyu / Protocols-4pub
  Multi-omics analysis protocols by Lyu.
  ☆53Updated 2 years ago
• zhangyuqing / ComBat-seq
  Batch effect adjustment based on negative binomial regression for RNA sequencing count data
  ☆201Updated 5 years ago
• JiekaiLab / scDIOR
  scDIOR: Single cell data IO softwaRe
  ☆153Updated 3 years ago
• reimandlab / ActivePathways
  Integrative pathway enrichment analysis of multivariate omics data
  ☆119Updated 6 months ago
• LocasaleLab / Single-Cell-Metabolic-Landscape
  Pipeline for exploring metebolic heterogeneity at single-cell resolution
  ☆74Updated 5 years ago
• al-mcintyre / merip_reanalysis_scripts
  Scripts for paper entitled "Limits in the detection of m6A changes using MeRIP/m6A-seq
  ☆52Updated 6 years ago
• reskejak / ATAC-seq
  Basic workflow for ATAC-seq analysis
  ☆92Updated last year
• cailab-tamu / scTenifoldKnk
  R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.
  ☆124Updated 4 months ago
• liulab-dfci / MAGeCK
  Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout (MAGeCK) is a computational tool to identify important genes from the recent gen…
  ☆34Updated 5 years ago
• STOmics / SAW
  ☆182Updated last year
• saezlab / progeny
  R package for Pathway RespOnsive GENe activity inference
  ☆113Updated 2 years ago
• erilu / bulk-rnaseq-analysis
  A complete guide for analyzing bulk RNA-seq data. Go from raw FASTQ files to mapping reads using STAR and differential gene expression an…
  ☆117Updated 5 years ago
• PoisonAlien / TCGAmutations
  R data package for pre-compiled somatic mutations from TCGA cohorts and CCLE
  ☆98Updated last year
• huayc09 / SeuratExtend
  ☆199Updated last month
• BaderLab / CellAnnotationTutorial
  Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods
  ☆98Updated 2 years ago
• czbiohub-sf / scell_lung_adenocarcinoma
  This is the repository that contains the analysis of the lung adenocarcinoma single cell dataset
  ☆154Updated 5 years ago
• PierreBSC / Viral-Track
  ☆62Updated 5 years ago