OpenGene / scrnapipLinks
A Systematic and Dynamic Pipeline for Single-Cell RNA Sequencing Analysis
☆112Updated last year
Alternatives and similar repositories for scrnapip
Users that are interested in scrnapip are comparing it to the libraries listed below
Sorting:
- SCSA: cell type annotation for single-cell RNA-seq data☆91Updated 2 years ago
- Single Cell Analysis Pipelines☆107Updated last week
- ☆86Updated last month
- Cell types enrichment analysis☆202Updated last year
- An open source and flexible pipeline to analysis high-throughput DNBelab C Series single-cell RNA datasets☆114Updated 2 weeks ago
- Analysis pipeline for ATAC-seq data☆76Updated last year
- Integrative pathway enrichment analysis of multivariate omics data☆114Updated 2 months ago
- A docker image for single-cell analysis☆91Updated this week
- The goal of `ggVolcano` is to help users make a beautiful volcano map more easily, including general volcano plot(`ggvolcano`), gradient …☆89Updated 2 years ago
- Scripts for paper entitled "Limits in the detection of m6A changes using MeRIP/m6A-seq☆51Updated 5 years ago
- Basic workflow for ATAC-seq analysis☆86Updated last year
- Updated implementation of the GSEA-P R application for modern R distributions☆97Updated 3 years ago
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆97Updated 2 years ago
- ☆222Updated this week
- ☆84Updated last year
- ☆95Updated last week
- Multi-omics analysis protocols by Lyu.☆51Updated 2 years ago
- ☆67Updated 7 months ago
- R data package for pre-compiled somatic mutations from TCGA cohorts and CCLE☆97Updated last year
- SIB course on single cell transcriptomics by mostly using the Seurat pipeline☆84Updated 2 months ago
- kallisto | bustools workflow for pre-processing single-cell RNA-seq data☆118Updated 3 years ago
- ☆115Updated last month
- ☆172Updated last year
- Comprehensive tutorial for differential methylation analysis, differential variability analysis and integrative analysis☆28Updated last year
- A complete guide for analyzing bulk RNA-seq data. Go from raw FASTQ files to mapping reads using STAR and differential gene expression an…☆98Updated 5 years ago
- ☆142Updated 7 years ago
- Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout (MAGeCK) is a computational tool to identify important genes from the recent gen…☆32Updated 4 years ago
- Batch effect adjustment based on negative binomial regression for RNA sequencing count data☆192Updated 5 years ago
- ☆62Updated 5 years ago
- ☆119Updated 2 years ago