A Snakemake pipeline to go from fastq mRNA sequencing files to raw and normalised counts (usable for downstream EDA and differential analysis)
☆18Mar 3, 2023Updated 3 years ago
Alternatives and similar repositories for snakemake_rnaseq
Users that are interested in snakemake_rnaseq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- RNA-seq workflow using STAR and DESeq2☆373Oct 21, 2026Updated last week
- workflow to analysis of whole-exome-sequencing☆13Feb 12, 2020Updated 6 years ago
- Course materials for the IBioIC Introduction to Bioinformatics training course☆12Jun 4, 2017Updated 9 years ago
- A R package and executable for the preprocessing, statistical analysis, and downstream testing and visualization of differentially methyl…☆50Oct 10, 2023Updated 3 years ago
- RNA-seq for Mendelian disease diagnostics: A hands-on tutorial through bioinformatic tools and workflows☆17Mar 7, 2022Updated 4 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Snakemake based pipeline for RNA-Seq analysis☆31Jun 26, 2019Updated 7 years ago
- Goslin is the Grammar on succinct lipid nomenclature.☆14Sep 16, 2026Updated last month
- Single sample pathway analysis tools for omics data☆16Nov 9, 2024Updated last year
- Calculation of distance metrics for matrices☆26Mar 1, 2019Updated 7 years ago
- Deep Learning method for novel virus detection in sequencing data☆10Mar 19, 2025Updated last year
- The R Bioconductor package for scMAGeCK.☆14Jul 10, 2026Updated 3 months ago
- rMSI processing methods using C++☆11Dec 3, 2021Updated 4 years ago
- ☆13May 11, 2024Updated 2 years ago
- Docker container for genomics analyses in R.☆28Apr 29, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Inference of gene dependency from RNAi screening datasets.☆19Apr 9, 2020Updated 6 years ago
- Provide programmatic access to the tonsil cell atlas datasets☆10Oct 22, 2026Updated last week
- A set of processes/pipelines for bioinformatics☆15Updated this week
- Simple search box for GitHub wikis.☆20Mar 7, 2025Updated last year
- A Docker-based Data Science cookiecutter (for myself)☆13May 3, 2021Updated 5 years ago
- Negative binomial maximum likelihood estimate implementation in Python using L-BFGS-B☆15Jan 27, 2022Updated 4 years ago
- A Systematic and Dynamic Pipeline for Single-Cell RNA Sequencing Analysis☆113Oct 16, 2023Updated 3 years ago
- Single-cell immune repertoire trajectory analysis in R☆12Aug 8, 2025Updated last year
- miRTrace☆13Jun 14, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Tools for Adaptive Immune Receptor Sequence-Based Machine and Deep Learning☆15Aug 22, 2026Updated 2 months ago
- Workflow for identifying and classifying homologous gene/protein sequences☆21Oct 6, 2025Updated last year
- Signaling Pathway Visualizer☆10Jun 22, 2019Updated 7 years ago
- ☆15Jun 27, 2025Updated last year
- CellAnn☆12Nov 3, 2023Updated 2 years ago
- sharing interactive single cell gene expression visualizations from Seurat☆13May 18, 2023Updated 3 years ago
- Survival Analysis for Protein-Level TCGA Analysis☆12Nov 30, 2018Updated 7 years ago
- ☆11Feb 16, 2025Updated last year
- HGVS Nomenclature website☆13Oct 14, 2026Updated 2 weeks ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆12Mar 23, 2022Updated 4 years ago
- CADRE: Contextual Attention-based Drug REsponse☆12Nov 23, 2020Updated 5 years ago
- 我与单细胞交响乐🤓☆23Nov 4, 2021Updated 4 years ago
- Steamboat is an interpretable framework to study multiscale cellular interactions in tissues☆11Oct 21, 2026Updated last week
- ☆11Jan 29, 2020Updated 6 years ago
- <<Managing Your Biological Data with Python>> wirtten in Python 3☆34Sep 21, 2017Updated 9 years ago
- Easy and comprehensive biological network reconstruction and analysis☆38Sep 8, 2026Updated last month