BleekerLab / snakemake_rnaseqLinks
A Snakemake pipeline to go from fastq mRNA sequencing files to raw and normalised counts (usable for downstream EDA and differential analysis)
☆17Updated 2 years ago
Alternatives and similar repositories for snakemake_rnaseq
Users that are interested in snakemake_rnaseq are comparing it to the libraries listed below
Sorting:
- tools to find circRNAs in RNA-seq data☆44Updated 8 years ago
- Tutorial Website☆60Updated 4 years ago
- release version☆56Updated 3 years ago
- HMMRATAC peak caller for ATAC-seq data☆99Updated last year
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆67Updated 6 years ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆69Updated 5 months ago
- ATAC-seq snakemake pipeline☆88Updated 5 years ago
- Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)☆63Updated 4 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆61Updated 3 months ago
- From RNA-seq raw reads to enriched pathways by DEGs☆33Updated last year
- Pipeline for Cut&Tag analysis☆24Updated 8 months ago
- Publication quality NGS track plotting☆117Updated 2 months ago
- fork of RSeQC python RNAseq metrics suit of tools