A Snakemake pipeline to go from fastq mRNA sequencing files to raw and normalised counts (usable for downstream EDA and differential analysis)
☆18Mar 3, 2023Updated 3 years ago
Alternatives and similar repositories for snakemake_rnaseq
Users that are interested in snakemake_rnaseq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Presentation and exercises for the Software Sustainability Institute Research Data Visualisation Workshop (RDVW)☆15Apr 10, 2018Updated 8 years ago
- RNA-seq workflow using STAR and DESeq2☆371Updated this week
- workflow to analysis of whole-exome-sequencing☆13Feb 12, 2020Updated 6 years ago
- Goslin is the Grammar on succinct lipid nomenclature.☆14Sep 16, 2026Updated 3 weeks ago
- A R package and executable for the preprocessing, statistical analysis, and downstream testing and visualization of differentially methyl…☆50Oct 10, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Single sample pathway analysis tools for omics data☆16Nov 9, 2024Updated last year
- Course materials for the IBioIC Introduction to Bioinformatics training course☆12Jun 4, 2017Updated 9 years ago
- Calculation of distance metrics for matrices☆26Mar 1, 2019Updated 7 years ago
- RNA-seq for Mendelian disease diagnostics: A hands-on tutorial through bioinformatic tools and workflows☆17Mar 7, 2022Updated 4 years ago
- Snakemake based pipeline for RNA-Seq analysis☆31Jun 26, 2019Updated 7 years ago
- A set of processes/pipelines for bioinformatics☆15Sep 19, 2026Updated 3 weeks ago
- ☆13May 11, 2024Updated 2 years ago
- The R Bioconductor package for scMAGeCK.☆14Jul 10, 2026Updated 3 months ago
- Survival Analysis for Protein-Level TCGA Analysis☆12Nov 30, 2018Updated 7 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- rMSI processing methods using C++☆11Dec 3, 2021Updated 4 years ago
- R code in workflow of chip-seq analysis☆11Nov 20, 2019Updated 6 years ago
- Single-cell immune repertoire trajectory analysis in R☆12Aug 8, 2025Updated last year
- Inference of gene dependency from RNAi screening datasets.☆19Apr 9, 2020Updated 6 years ago
- miRTrace☆13Jun 14, 2023Updated 3 years ago
- sharing interactive single cell gene expression visualizations from Seurat☆13May 18, 2023Updated 3 years ago
- ☆15Jun 27, 2025Updated last year
- Negative binomial maximum likelihood estimate implementation in Python using L-BFGS-B☆15Jan 27, 2022Updated 4 years ago
- A Systematic and Dynamic Pipeline for Single-Cell RNA Sequencing Analysis☆113Oct 16, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Open-Source Software for Omic Data Analysis and Visualization☆43Feb 25, 2026Updated 7 months ago
- CellAnn☆12Nov 3, 2023Updated 2 years ago
- A Docker-based Data Science cookiecutter (for myself)☆13May 3, 2021Updated 5 years ago
- Simple search box for GitHub wikis.☆20Mar 7, 2025Updated last year
- Workflow for identifying and classifying homologous gene/protein sequences☆21Oct 6, 2025Updated last year
- Scripts☆10Jun 29, 2016Updated 10 years ago
- Mosaic single cell data integration using non-overlapping features☆39Sep 20, 2022Updated 4 years ago
- ☆12Mar 23, 2022Updated 4 years ago
- Signaling Pathway Visualizer☆10Jun 22, 2019Updated 7 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A collection of M models downloaded from published studies☆18Feb 18, 2016Updated 10 years ago
- Pipeline for the analysis of PE ChIP-seq data☆15Jul 20, 2020Updated 6 years ago
- <<Managing Your Biological Data with Python>> wirtten in Python 3☆34Sep 21, 2017Updated 9 years ago
- Tools for crop simulations with Aquacrop V6☆11Dec 2, 2022Updated 3 years ago
- ☆11Jan 29, 2020Updated 6 years ago
- Code, data and analysis for moslin.☆15Oct 7, 2024Updated 2 years ago
- ☆16Jul 9, 2026Updated 3 months ago