A Snakemake pipeline to go from fastq mRNA sequencing files to raw and normalised counts (usable for downstream EDA and differential analysis)
☆18Mar 3, 2023Updated 3 years ago
Alternatives and similar repositories for snakemake_rnaseq
Users that are interested in snakemake_rnaseq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Presentation and exercises for the Software Sustainability Institute Research Data Visualisation Workshop (RDVW)☆15Apr 10, 2018Updated 8 years ago
- RNA-seq workflow using STAR and DESeq2☆362Dec 18, 2025Updated 5 months ago
- workflow to analysis of whole-exome-sequencing☆12Feb 12, 2020Updated 6 years ago
- Goslin is the Grammar on succinct lipid nomenclature.☆13Apr 29, 2026Updated 3 weeks ago
- Single sample pathway analysis tools for omics data☆15Nov 9, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Calculation of distance metrics for matrices☆26Mar 1, 2019Updated 7 years ago
- Course materials for the IBioIC Introduction to Bioinformatics training course☆12Jun 4, 2017Updated 8 years ago
- RNA-seq for Mendelian disease diagnostics: A hands-on tutorial through bioinformatic tools and workflows☆17Mar 7, 2022Updated 4 years ago
- Snakemake based pipeline for RNA-Seq analysis☆31Jun 26, 2019Updated 6 years ago
- The R Bioconductor package for scMAGeCK.☆13Apr 20, 2024Updated 2 years ago
- CellAnn☆12Nov 3, 2023Updated 2 years ago
- a full day lesson material to teach the basics of using a HPC cluster to novices☆36Jun 26, 2019Updated 6 years ago
- ☆16Oct 10, 2023Updated 2 years ago
- Survival Analysis for Protein-Level TCGA Analysis☆12Nov 30, 2018Updated 7 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Automated pipeline for amplicon sequence analysis☆11Nov 25, 2025Updated 5 months ago
- Tools for Adaptive Immune Receptor Sequence-Based Machine and Deep Learning☆14May 7, 2026Updated 2 weeks ago
- Single-cell immune repertoire trajectory analysis in R☆12Aug 8, 2025Updated 9 months ago
- R code in workflow of chip-seq analysis☆11Nov 20, 2019Updated 6 years ago
- Inference of gene dependency from RNAi screening datasets.☆19Apr 9, 2020Updated 6 years ago
- rMSI processing methods using C++☆11Dec 3, 2021Updated 4 years ago
- miRTrace☆12Jun 14, 2023Updated 2 years ago
- A Systematic and Dynamic Pipeline for Single-Cell RNA Sequencing Analysis☆112Oct 16, 2023Updated 2 years ago
- Alphafold3 using mmseqs2-gpu for sequence query☆39Feb 9, 2026Updated 3 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆16Jun 27, 2025Updated 10 months ago
- Negative binomial maximum likelihood estimate implementation in Python using L-BFGS-B☆15Jan 27, 2022Updated 4 years ago
- A set of processes/pipelines for bioinformatics☆15May 14, 2026Updated last week
- ☆12May 11, 2024Updated 2 years ago
- Scripts☆10Jun 29, 2016Updated 9 years ago
- A Docker-based Data Science cookiecutter (for myself)☆13May 3, 2021Updated 5 years ago
- Simple search box for GitHub wikis.☆20Mar 7, 2025Updated last year
- ☆10Jan 29, 2020Updated 6 years ago
- ☆11Mar 23, 2022Updated 4 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- sharing interactive single cell gene expression visualizations from Seurat☆13May 18, 2023Updated 3 years ago
- Pipeline for the analysis of PE ChIP-seq data☆15Jul 20, 2020Updated 5 years ago
- Code, data and analysis for moslin.☆15Oct 7, 2024Updated last year
- GFF3 format with miRNA and isomiR information from sequencing data☆17Aug 5, 2019Updated 6 years ago
- classification of higher-order structural variants from breakpoint data☆11Jan 8, 2018Updated 8 years ago
- 我与单细胞交响乐🤓☆24Nov 4, 2021Updated 4 years ago
- <<Managing Your Biological Data with Python>> wirtten in Python 3☆34Sep 21, 2017Updated 8 years ago