BleekerLab / snakemake_rnaseq
A Snakemake pipeline to go from fastq mRNA sequencing files to raw and normalised counts (usable for downstream EDA and differential analysis)
☆14Updated 2 years ago
Alternatives and similar repositories for snakemake_rnaseq
Users that are interested in snakemake_rnaseq are comparing it to the libraries listed below
Sorting:
- Pipeline for Cut&Tag analysis☆21Updated last month
- ATAC-seq processing pipeline☆33Updated 3 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆57Updated last month
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- Tutorial Website☆59Updated 4 years ago
- An R package to time somatic mutations☆61Updated 4 years ago
- ☆30Updated 6 years ago
- Quantitation and visualization of differential alternative splicing events☆10Updated 2 years ago
- Repo for Physalia course Analysis of Single Cell RNA-Seq data☆32Updated 5 years ago
- A pipeline to process m6A-seq data and down stream analysis.☆44Updated 4 years ago
- Main repository for Drews et al. (Nature, 2022)☆40Updated last year
- From RNA-seq raw reads to enriched pathways by DEGs☆32Updated last year
- Detection of differential translated genes using Ribo-seq☆15Updated 4 years ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆47Updated 9 months ago
- Workshop • Analysis of RNA-seq data☆35Updated last year
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆35Updated 3 years ago
- TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data☆23Updated 2 years ago
- ☆38Updated 2 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆77Updated 2 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- tools to find circRNAs in RNA-seq data☆42Updated 7 years ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆59Updated last year
- Integrative analysis pipeline for pooled CRISPR functional genetic screens☆30Updated last year
- ☆13Updated 8 years ago
- Define regions in the genome☆30Updated 3 years ago
- DCC/DAC methylation pipeline source☆55Updated 4 years ago
- Arabidopsis RNA_-seq downstream analysis shiny app☆30Updated 5 years ago
- Genomic coordinates of problematic genomic regions as GRanges☆37Updated 5 months ago
- Estimate locus specific human LINE-1 expression.☆35Updated 2 years ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆66Updated 5 years ago