Alternatives and similar repositories for RNAseqStat2

Users that are interested in RNAseqStat2 are comparing it to the libraries listed below

• shengxin321 / HumanKidney_eQTL_and_snATAC-seq
  codes used in the human kidney eQTL(cf) and eQTL(ci) and snATAC-seq data
  ☆19Updated 4 years ago
• bsml320 / scGWAS
  A method which leverages scRNA-seq data to achieve two goals: (1) to infer the cell types in which the disease-associated genes manifest …
  ☆26Updated 3 years ago
• segrelabgenomics / TwoSampleMR_pipeline
  Pipeline that runs two-sample Mendelian randomization on molecular QTLs and GWAS loci and tests for horizontal pleiotropy.
  ☆26Updated last year
• zgyaru / anti-PD1_ESCC
  ☆17Updated 2 years ago
• CICAMS-Liu-lab / ECGEA
  ☆16Updated 4 years ago
• UMCUGenetics / primary-met-wgs-comparison
  Code repo for all analysis done for the 'Pan-cancer whole genome comparison of primary and metastatic solid tumors' study.
  ☆18Updated 2 years ago
• ChongJenniferZhang / CLCA_WGS
  ☆26Updated 2 years ago
• ManchesterBioinference / IntegratingATAC-RNA-HiC
  scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper
  ☆25Updated 2 years ago
• yunshun / HumanBreast10X
  ☆26Updated 3 years ago
• franklinhuanglab / scRNA-seq-Analysis-of-Prostate-Cancer-Samples
  Code for the manuscript "Single-cell analysis of human primary prostate cancer reveals the heterogeneity of tumor-associated epithelial c…
  ☆24Updated 3 years ago
• omicsCore / scTyper
  scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data
  ☆31Updated 2 years ago
• lijxug / CSOmapR
  R package of CSOmap(developing
  ☆13Updated 3 years ago
• theislab / GWAS-scRNAseq-Integration
  A Shiny tool to define the cell-type of action by integrating single cell expression data with GWAS
  ☆12Updated 6 years ago
• secrierlab / EMT
  This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.
  ☆13Updated 2 years ago
• jbryois / scRNA_disease
  Code for our paper: https://www.biorxiv.org/content/10.1101/528463v1
  ☆18Updated 5 years ago
• junjunlab / tackPlotR
  An R package to visualize bigwigs.
  ☆31Updated 3 years ago
• reedliu / scRNA-codes
  ☆17Updated 5 years ago
• YiPeng-Gao / scDaPars
  Dynamic Analysis of Alternative Polyadenylation from single-cell RNA-seq (scDaPars)
  ☆17Updated 4 years ago
• chensujun / scRNA
  ☆32Updated 4 years ago
• noush-joglekar / biccn_tilgner_scisorseq
  Code for the BRAIN Initiative Cell Census Network (BICCN) - RF1 Tilgner
  ☆20Updated last year
• shijianasdf / UsualRcode
  bioinformatics R test code
  ☆14Updated last month
• aet21 / EpiSCORE
  Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles
  ☆34Updated 6 months ago
• gxiaolab / scAllele
  ☆39Updated last month
• wenweixiong / MARVEL
  ☆51Updated last year
• WRui / Post_Implantation
  ☆29Updated 4 years ago
• elizabethdorans / pgBoost
  ☆16Updated this week
• Changwuuu / Cuproptosis-pancancer
  ☆18Updated 2 years ago
• Xiaxy-XuLab / PanCAF
  ☆37Updated 3 years ago
• TianLab-Bioinfo / scMAGIC
  A robust and accurate cell type classifier for single cell RNA-seq data
  ☆17Updated 2 years ago
• karthikj89 / scgenetics
  identifying disease critical cell types and programs from single cell RNAseq
  ☆57Updated 3 years ago