☆34Apr 25, 2022Updated 3 years ago
Alternatives and similar repositories for SADDLE
Users that are interested in SADDLE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Retrieve sequences flanked by an arbitrary number of primers from a nucleotide collection.☆11Jun 11, 2021Updated 4 years ago
- NGS-PrimerPlex is a high-throughput tool for mupltiplex primer design☆69May 26, 2025Updated 10 months ago
- Multiplex Primer Design☆22Oct 30, 2020Updated 5 years ago
- Package to design primers for MutaSeq and related methods☆11Jan 15, 2021Updated 5 years ago
- An R Package for Multiplex PCR Primer Design and Analysis☆30Jul 12, 2025Updated 8 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A program for degenerate primer design for broad taxonomic-range PCR for microbial ecology studies☆32Jun 9, 2023Updated 2 years ago
- ☆17Jul 27, 2023Updated 2 years ago
- ☆13Mar 11, 2019Updated 7 years ago
- Highly sensitive pathogen detection☆12Oct 5, 2020Updated 5 years ago
- This repository houses the code to run SURPI+, a rapid computational pipeline for comprehensive identification of pathogens from clinical…☆42Nov 20, 2019Updated 6 years ago
- PCR Primer Quality Control☆71Sep 29, 2025Updated 6 months ago
- curPrimers is a tool for trimming primer sequences from amplicon based NGS reads☆17May 26, 2025Updated 10 months ago
- Multiplex Primer Design☆12May 3, 2020Updated 5 years ago
- A toolkit to design standard primers, multiplexed primers, and primers around SV's☆13Oct 29, 2022Updated 3 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- CNV analysis workflow code for the manuscript☆13Jun 22, 2020Updated 5 years ago
- ☆11Jun 14, 2023Updated 2 years ago
- This repository contains scripts used in the manuscript "Massive expansion of human gut bacteriophage diversity"☆19Feb 3, 2021Updated 5 years ago
- ☆11Oct 31, 2022Updated 3 years ago
- WisecondorX — An evolved WISECONDOR☆113Updated this week
- Associated code for EvoWeaver publication☆17May 19, 2025Updated 10 months ago
- SEEKIN: SEquence-based Estimation of KINship☆14Oct 11, 2017Updated 8 years ago
- a tool for designing primer panels for multiplex PCR.☆107Feb 5, 2024Updated 2 years ago
- CNV detection tool for targeted NGS panel data☆16Feb 28, 2022Updated 4 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆39May 22, 2024Updated last year
- Repository for general metagenomics Nextflow pipeline☆25Mar 23, 2026Updated last week
- Automatically design multiplex PCR primer pairs for diverse templates☆33May 23, 2024Updated last year
- PrimerTree: Visually Assessing the Specificity and Informativeness of Primer Pairs☆52Oct 28, 2025Updated 5 months ago
- Regenotyping structural variants through an accurate and efficient force-calling method☆26Nov 28, 2025Updated 4 months ago
- Tool to flag foldback and chimeric artifacts in long-read sequence alignment files☆37Jan 21, 2026Updated 2 months ago
- ☆12Aug 23, 2023Updated 2 years ago
- A bioinformatics best-practice analysis pipeline for the analysis of shallow whole genome sequencing (sWGS) data for the identification o…☆15Mar 13, 2026Updated 2 weeks ago
- DNA and RNA variant calling pipelines with HLA typing and Neoantigen predictions☆11Jul 8, 2021Updated 4 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Clin-mNGS: Automated pipeline for pathogen detection from clinical metagenomic data☆18Jun 29, 2021Updated 4 years ago
- DNA copy number detection from off-target sequence data☆33May 17, 2018Updated 7 years ago
- Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens☆38Jan 22, 2026Updated 2 months ago
- A utility for splitting mixed origin NGS reads☆10Jun 1, 2021Updated 4 years ago
- A method for reconstruction of subspecies composition and functional profiles from metagenomic data☆13May 27, 2024Updated last year
- Fragmentase Artifact Detection and Elimination☆12Mar 22, 2022Updated 4 years ago
- Analyses of Ribo-seq rRNA fragments for Differential Ribosome Heterogeneity and Collision predictions☆12Jul 23, 2025Updated 8 months ago