NinaGXie / SADDLE
☆33Updated 3 years ago
Alternatives and similar repositories for SADDLE:
Users that are interested in SADDLE are comparing it to the libraries listed below
- Snakemake pipelines for nanopore sequencing data archiving and processing☆90Updated 3 years ago
- DNA 5mC methylation detection from Dorado or Guppy basecalled Oxford Nanopore reads☆50Updated 2 months ago
- ☆39Updated 3 weeks ago
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 8 years ago
- New version☆33Updated 8 years ago
- NGS-PrimerPlex is a high-throughput tool for mupltiplex primer design☆58Updated last year
- PCR Primer Quality Control☆59Updated last year
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated last year
- Lima - Demultiplex Barcoded PacBio Samples☆66Updated last week
- Workflow for Building Microsynteny Networks☆53Updated 2 years ago
- This repository houses the code to run SURPI+, a rapid computational pipeline for comprehensive identification of pathogens from clinical…☆40Updated 5 years ago
- Automates running of OrthoMCL software from http://orthomcl.org/common/downloads/software/v2.0/☆80Updated 4 years ago
- Prediction of apoplastic and cytoplasmic effectors in fungi and oomycetes☆21Updated 2 years ago
- Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.☆54Updated last week
- Wally: Visualization of aligned sequencing reads and contigs☆115Updated 3 weeks ago
- NLR annotation tool☆26Updated last year
- Development version of Easyfig☆94Updated last year
- Synteny Imager☆62Updated 8 months ago
- A practical guide to build de-novo transcriptome assemblies for non-model organisms (described in Montero-Mendieta et al. 2017).☆27Updated 7 years ago
- Scripting analyses of genomes in Ensembl Plants☆39Updated last month
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆55Updated 2 years ago
- Simple code snippets and data for the One Flowcell - One Assembly study☆36Updated 7 years ago
- source code for EVM☆109Updated 5 months ago
- Helper scripts for biological data processing from Sentieon☆64Updated 6 months ago
- TransPi – a comprehensive TRanscriptome ANalysiS PIpeline for de novo transcriptome assembly☆27Updated 3 years ago
- Error correction of ONT transcript reads☆58Updated last year
- A program for detection of tRNA genes☆60Updated 2 years ago
- perSVade: personalized Structural Variation detection☆39Updated 2 months ago
- Dfam Transposable Element Tools Docker container.☆92Updated last month
- NLR-Annotator upload☆65Updated last year