NinaGXie / SADDLE
☆31Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for SADDLE
- Helper scripts for biological data processing from Sentieon☆63Updated 2 weeks ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆88Updated 2 years ago
- ☆70Updated 4 years ago
- PCR Primer Quality Control☆59Updated 7 months ago
- Stratification BED files from the Global Alliance for Genomics and Health (GA4GH) Benchmarking Team and the Genome in a Bottle Consortium…☆75Updated last year
- PacBio Assembly Tool Suite: Reads in ⇨ Assembly out☆113Updated 4 years ago
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆62Updated 3 months ago
- Tools for working with second gen assemblies, fasta sequences, etc☆92Updated 8 years ago
- Genomic related tools☆70Updated 2 years ago
- Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.☆51Updated 2 weeks ago
- Lima - Demultiplex Barcoded PacBio Samples☆65Updated last week
- Simple code snippets and data for the One Flowcell - One Assembly study☆36Updated 6 years ago
- Snakemake workflow for metagenomic classification with Kraken2☆66Updated last year
- NGS-PrimerPlex is a high-throughput tool for mupltiplex primer design☆54Updated last year
- Workflow for Building Microsynteny Networks☆48Updated 2 years ago
- This script will extract the intron feature gff3 and sequence from gene_exon gff3 and fasta file.☆33Updated 6 years ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆65Updated 2 months ago
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆56Updated 7 months ago
- A collection of command line tools for working with sequencing data☆50Updated last week
- source code for EVM☆103Updated 10 months ago
- GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis…☆47Updated 4 years ago
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆77Updated 3 years ago
- Detecting genome structural variants with deep learning in single molecule sequencing☆100Updated 7 months ago
- PlantTribes is a collection of automated gene family analysis pipelines for comparative plant genomics☆34Updated last year
- web documentation for Trinotate☆48Updated last year
- Development version of Easyfig☆89Updated 10 months ago
- Dfam Transposable Element Tools Docker container.☆84Updated last month
- Genome Scripts used in fungal comparative genomics☆65Updated 4 years ago
- Wally: Visualization of aligned sequencing reads and contigs☆108Updated last month
- Error correction of ONT transcript reads☆58Updated last year