aakechin / cutPrimers
curPrimers is a tool for trimming primer sequences from amplicon based NGS reads
☆16Updated 5 years ago
Alternatives and similar repositories for cutPrimers:
Users that are interested in cutPrimers are comparing it to the libraries listed below
- A new tool to infer sex from massively parallel sequencing data.☆16Updated 10 months ago
- Freddie: Annotation-independent detection and discovery of transcriptomic alternative splicing isoforms using long-read sequencing☆17Updated 2 years ago
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆31Updated 6 years ago
- Automatically design multiplex PCR primer pairs for diverse templates☆26Updated 10 months ago
- Tool for demultiplexing Nanopore barcode sequence data☆21Updated 3 years ago
- processing 10x genomics reads☆25Updated 5 years ago
- CNV Rapid Aberration Detection And Reporting☆12Updated 4 years ago
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 6 years ago
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 4 years ago
- An insertion caller for Illumina paired-end WGS data.☆23Updated 8 months ago
- toolkit to process gtf files☆17Updated 3 years ago
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated last year
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 9 years ago
- microRNA PREdiction From small RNA-seq data☆29Updated 7 years ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆42Updated last week
- Immuological gene typing and annotation for genome assembly☆35Updated last month
- Reconstruction of focal amplifications with long reads☆20Updated 2 weeks ago
- Workflows for metagenomic sequence data processing and analysis.☆17Updated 5 years ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆53Updated 6 months ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆65Updated 2 weeks ago
- Tumour-only somatic mutation calling using long reads☆26Updated 5 months ago
- A tool for sample swap identification in high throughput sequencing studies☆10Updated last month
- Polyidus provides a framework to catch chimeric DNA sequences with a tale of python☆8Updated last year
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆18Updated last month
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆28Updated last year
- catalog for long-read sequencing tools☆32Updated 2 years ago
- ☆29Updated 4 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 6 years ago
- ☆22Updated 4 months ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago