aakechin / cutPrimersLinks
curPrimers is a tool for trimming primer sequences from amplicon based NGS reads
☆16Updated 3 months ago
Alternatives and similar repositories for cutPrimers
Users that are interested in cutPrimers are comparing it to the libraries listed below
Sorting:
- a lexicographically-based GTF/GFF sorter☆36Updated 4 months ago
- Tool for demultiplexing Nanopore barcode sequence data☆24Updated 4 years ago
- Immuological gene typing and annotation for genome assembly☆37Updated 5 months ago
- Long-read splice alignment with high accuracy☆64Updated 11 months ago
- Tumour-only somatic mutation calling using long reads☆27Updated 10 months ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- ☆34Updated last year
- ☆32Updated 2 years ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 10 months ago
- toolkit to process gtf files☆17Updated 3 years ago
- Freddie: Annotation-independent detection and discovery of transcriptomic alternative splicing isoforms using long-read sequencing☆16Updated 2 years ago
- wg-blimp: an end-to-end analysis pipeline for whole genome bisulfite sequencing data☆28Updated 3 years ago
- ☆19Updated 2 years ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆15Updated 4 years ago
- Long read to rMATS☆32Updated 2 years ago
- processing 10x genomics reads☆26Updated 5 years ago
- Genotyping of segregating mobile elements insertions☆19Updated 4 years ago
- Population-wide Deletion Calling☆35Updated 4 months ago
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆23Updated 2 years ago
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 6 years ago
- A computational algorithm and software tool for fast and accurate detection of gene fusion by long-read transcriptome sequencing☆21Updated 3 years ago
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆35Updated 6 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated this week
- A toolkit to design standard primers, multiplexed primers, and primers around SV's☆12Updated 2 years ago
- A tutorial on structural variant calling for short read sequencing data☆39Updated 10 months ago
- fastx-utils using klib☆19Updated 4 years ago
- ☆29Updated 4 years ago
- ☆36Updated 2 years ago
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆63Updated 3 weeks ago
- interactive Multi Objective K-mer Analysis☆23Updated 2 years ago