aakechin / cutPrimersLinks
curPrimers is a tool for trimming primer sequences from amplicon based NGS reads
☆17Updated 7 months ago
Alternatives and similar repositories for cutPrimers
Users that are interested in cutPrimers are comparing it to the libraries listed below
Sorting:
- ☆38Updated last year
- Long-read splice alignment with high accuracy☆64Updated last year
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- Long read to rMATS☆32Updated 2 years ago
- Immuological gene typing and annotation for genome assembly☆38Updated 9 months ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆31Updated 4 months ago
- Tool for demultiplexing Nanopore barcode sequence data☆25Updated 3 weeks ago
- PopSTR - A Population based microsatellite genotyper☆33Updated 2 years ago
- Structural variant VCF annotation, duplicate removal and comparison☆34Updated 2 months ago
- Human pan-genome analysis pipeline☆31Updated 5 years ago
- ☆33Updated 3 years ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 10 years ago
- A toolkit to design standard primers, multiplexed primers, and primers around SV's☆13Updated 3 years ago
- ☆24Updated last year
- ☆15Updated 7 years ago
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated 2 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated 3 weeks ago
- fastx-utils using klib☆20Updated 5 years ago
- This repo is be archived, these workflows are still housed housed in the GATK repository under the scripts directory. The workflows are a…☆22Updated 5 years ago
- This is an unsupported fork of the PacBio blasr aligner. It contains my (very beta) optimizations and new functionality. It may disappea…☆22Updated 6 years ago
- wg-blimp: an end-to-end analysis pipeline for whole genome bisulfite sequencing data☆28Updated 3 years ago
- ☆29Updated 3 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- A computational algorithm and software tool for fast and accurate detection of gene fusion by long-read transcriptome sequencing☆21Updated 4 years ago
- ☆38Updated 2 years ago
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated last year
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆20Updated last week
- Two pass alignment for long reads☆22Updated 4 years ago
- Genotyping of segregating mobile elements insertions☆19Updated 4 years ago
- Tumour-only somatic mutation calling using long reads☆28Updated last year