mattheiter / openPrimeRLinks
An R Package for Multiplex PCR Primer Design and Analysis
☆29Updated 6 months ago
Alternatives and similar repositories for openPrimeR
Users that are interested in openPrimeR are comparing it to the libraries listed below
Sorting:
- A command line tool to compute mapping statistics from a BAM file☆25Updated 3 years ago
- NGSNGS: Next generation simulator for next generation sequencing data☆56Updated last year
- Primer3Plus is an advanced web interface for primer3.☆44Updated 9 months ago
- PrimerTree: Visually Assessing the Specificity and Informativeness of Primer Pairs☆52Updated 3 months ago
- A catalogue of available long read sequencing data analysis tools☆85Updated last month
- A python package and a set of shell commands to handle GTF files☆50Updated 3 weeks ago
- BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale☆57Updated 2 years ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 3 years ago
- Trimming tool for Oxford Nanopore sequence data☆22Updated 4 years ago
- Flash2 has some improvements from flash_1 including new logic from innie and outie overlaps as well as some initial steps for flash for a…☆51Updated 8 years ago
- Automatically design multiplex PCR primer pairs for diverse templates☆31Updated last year
- A microbial profiling framework for metagenomic analysis☆24Updated 5 years ago
- Generate unique KMERs for every contig in a FASTA file☆49Updated 3 years ago
- Protein Alignment and Detection Interface☆60Updated last year
- Metagenome analysis using the Kraken software suite☆36Updated 3 years ago
- MetaMLST is a computational tool for in-silico Multi-Locus Sequence Typing from metagenomic data.☆16Updated 2 years ago
- An efficient way to guess the library type of your RNA-Seq data.☆33Updated 3 years ago
- A general metagenomics data mining system focus on robust microbiome research☆58Updated last week
- A program for degenerate primer design for broad taxonomic-range PCR for microbial ecology studies☆32Updated 2 years ago
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆24Updated 2 years ago
- A reference viral database (RVDB)☆26Updated 7 years ago
- ☆15Updated 4 months ago
- The Zika bioinformatics pipeline☆36Updated 5 years ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- an R/Shiny application for interactive creation of Circos plot☆50Updated 2 years ago
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆26Updated 2 months ago
- A shiny package for microbiome functional enrichment analysis☆38Updated last month
- Snakemake pipeline for simulating shotgun metagenomic samples☆29Updated 5 months ago
- Maximum likelihood demultiplexing☆50Updated 11 months ago
- Evolutionary Transcriptomics with R☆47Updated this week