CNV analysis workflow code for the manuscript
☆13Jun 22, 2020Updated 5 years ago
Alternatives and similar repositories for CNVWorkflow_Code
Users that are interested in CNVWorkflow_Code are comparing it to the libraries listed below
Sorting:
- a bucket of bioinformatics scripts☆13Updated this week
- RNA editing tests☆17Sep 24, 2020Updated 5 years ago
- CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…☆20Jan 17, 2020Updated 6 years ago
- Copy number calling and variant classification using targeted short read sequencing☆144Feb 19, 2026Updated last week
- Enabling differential allele-specific analysis☆11Dec 28, 2024Updated last year
- ☆11Jul 13, 2018Updated 7 years ago
- Comprehensive genome-wide visualization of absolute copy number and copy neutral variations☆29Apr 10, 2019Updated 6 years ago
- Method to detect exonic CNVs in NGS Gene Targeted Panels☆16Dec 3, 2019Updated 6 years ago
- ☆14Sep 20, 2022Updated 3 years ago
- Pipeline for the identification of cancer-related mutations from RNA-seq data☆14Aug 17, 2021Updated 4 years ago
- Public data resources and Bioconductor: The goal of this workshop is to introduce Bioconductor packages for finding, accessing, and using…☆15May 12, 2025Updated 9 months ago
- Multi-origin batch effect remover method☆17Jan 31, 2023Updated 3 years ago
- ☆14May 27, 2025Updated 9 months ago
- ☆16Sep 21, 2021Updated 4 years ago
- Characterization of Germline variants☆100Mar 15, 2022Updated 3 years ago
- ☆25Feb 20, 2025Updated last year
- Model files for Sentieon variant callers☆16Feb 9, 2026Updated 2 weeks ago
- Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.☆158Feb 12, 2026Updated 2 weeks ago
- RADAR is devised to detect and visualize all possible twelve-types of RNA editing events from RNA-seq datasets.☆20Sep 2, 2025Updated 5 months ago
- CNV detection tool for targeted NGS panel data☆16Feb 28, 2022Updated 4 years ago
- RNA editing quantification in deep transcriptome data☆16Jul 17, 2025Updated 7 months ago
- ☆18Aug 22, 2021Updated 4 years ago
- Search for activating regulatory variants in the tumor genome☆14Apr 11, 2025Updated 10 months ago
- ☆43Feb 9, 2024Updated 2 years ago
- Mutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19☆77Jan 13, 2026Updated last month
- Quantifying copy number signatures from absolute copy number profiles☆26Jul 23, 2025Updated 7 months ago
- ☆27Feb 10, 2025Updated last year
- A community menagarie of automated variant validations using bcbio and the Common Workflow Language☆21Nov 3, 2021Updated 4 years ago
- Classifies genes as an oncogene, tumor suppressor gene, or as a non-driver gene by using Random Forests☆50Aug 3, 2024Updated last year
- Web-site for the 2020 CRUK CC Bioinformatics Summer School (Held virtually)☆24Mar 4, 2021Updated 4 years ago
- Decrypting somatic mutation patterns to reveal the evolution of cancer☆56Mar 10, 2021Updated 4 years ago
- DRAGEN Tumor/Normal workflow post-processing☆25Sep 18, 2023Updated 2 years ago
- Identify and correct invalid gene symbols☆62Nov 16, 2024Updated last year
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆41Jul 5, 2022Updated 3 years ago
- ☆26Aug 10, 2023Updated 2 years ago
- A Practical (And Opinionated) Guide To Analyzing 450K Data☆35Oct 2, 2014Updated 11 years ago
- 📚书:R语言实战机器学习☆57Nov 3, 2024Updated last year
- Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.☆200Mar 20, 2024Updated last year
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Feb 12, 2022Updated 4 years ago