Alternatives and similar repositories for STR-FM

Users that are interested in STR-FM are comparing it to the libraries listed below

• shapirolab / clineage

  View on GitHub
  ☆11Apr 21, 2023Updated 2 years ago
• iobio / iobio.js

  View on GitHub
  Client side iobio library for building and executing iobio commands
  ☆10Dec 31, 2018Updated 7 years ago
• campanam / BaitsTools

  View on GitHub
  Software for hybridization capture bait design
  ☆11Mar 20, 2024Updated last year
• mutalyzer / description-extractor

  View on GitHub
  HGVS variant description extractor
  ☆11Sep 14, 2020Updated 5 years ago
• DKFZ-ODCF / DKFZBiasFilter

  View on GitHub
  ☆12Dec 8, 2021Updated 4 years ago
• dnil / rhocall

  View on GitHub
  Call regions of homozygosity and make tentative UPD calls
  ☆12Jun 27, 2025Updated 7 months ago
• jodyhey / IMa3

  View on GitHub
  IMa3
  ☆13May 5, 2025Updated 9 months ago
• Mangul-Lab-USC / benchmarking_error_correction

  View on GitHub
  This is the GitHub repository for our benchmarking study "Benchmarking of computational error-correction methods for next-generation sequ…
  ☆12Mar 13, 2020Updated 5 years ago
• gregorykucherov / mreps

  View on GitHub
  mreps: software for tandem repeat identification in DNA
  ☆15Nov 13, 2019Updated 6 years ago
• AlgoLab / HapCHAT

  View on GitHub
  Adaptive haplotype assembly for efficiently leveraging high coverage in long reads
  ☆13Sep 4, 2018Updated 7 years ago
• CenterForMedicalGeneticsGhent / PREFACE

  View on GitHub
  PREFACE -- PREdict FetAl ComponEnt
  ☆15Jan 2, 2026Updated last month
• tomas-fer / HybPhyloMaker

  View on GitHub
  Bash scripts for analysis of Hyb-Seq data (from raw reads to species trees/networks)
  ☆20Nov 26, 2025Updated 2 months ago
• morisUtokyo / mTR

  View on GitHub
  tandem repeat finding from erroneous long reads
  ☆15Aug 4, 2025Updated 6 months ago
• seppinho / mutserve

  View on GitHub
  mtDNA Variant Caller
  ☆35Dec 23, 2024Updated last year
• aminallam / karect

  View on GitHub
  KAUST Assembly Read Error Correction Tool
  ☆15Aug 15, 2015Updated 10 years ago
• pblischak / polyploid-genotyping

  View on GitHub
  SNP genotyping in polyploids
  ☆17Aug 12, 2020Updated 5 years ago
• iobio / iobio.viz

  View on GitHub
  Visualization and charting JS library for streaming genomic data
  ☆19Dec 4, 2024Updated last year
• bahlolab / exSTRa

  View on GitHub
  Expanded STR algorithm for Illumina sequencing data
  ☆23Sep 11, 2022Updated 3 years ago
• ga4gh-beacon / beacon-elixir

  View on GitHub
  Elixir Beacon Reference Implementation. Latest release is compliant with v1.1.0 of the specification.
  ☆14Jun 19, 2020Updated 5 years ago
• galaxyproject / dunovo

  View on GitHub
  Reference-free duplex sequencing pipeline.
  ☆19Oct 20, 2022Updated 3 years ago
• paudano / kestrel

  View on GitHub
  Mapping-free variant caller for short-read Illumina data
  ☆20Apr 2, 2020Updated 5 years ago
• ekg / hhga

  View on GitHub
  haplotypes genotypes and alleles example decision synthesizer
  ☆20Jun 13, 2019Updated 6 years ago
• medvedevgroup / vargeno

  View on GitHub
  Towards fast and accurate SNP genotyping from whole genome sequencing data for bedside diagnostics.
  ☆22Feb 10, 2019Updated 7 years ago
• cauyrd / ScanIndel

  View on GitHub
  The integrated pipeline for Indel detection
  ☆17Apr 29, 2018Updated 7 years ago
• dooguypapua / eKLIPse

  View on GitHub
  a tool for predicting mitochondrial DNA deletions using soft-clipping
  ☆23Feb 3, 2022Updated 4 years ago
• Illumina / Pisces

  View on GitHub
  Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.
  ☆99Jun 22, 2022Updated 3 years ago
• kensung-lab / INSurVeyor

  View on GitHub
  An insertion caller for Illumina paired-end WGS data.
  ☆24Aug 22, 2025Updated 5 months ago
• humanlongevity / tredparse

  View on GitHub
  TREDPARSE: HLI Short Tandem Repeat (STR) caller
  ☆25Aug 20, 2020Updated 5 years ago
• tfwillems / HipSTR

  View on GitHub
  Genotype and phase short tandem repeats using Illumina whole-genome sequencing data
  ☆100Feb 27, 2023Updated 2 years ago
• iobio / minion

  View on GitHub
  Server wrapper that turns command line tools into web services
  ☆60Aug 8, 2018Updated 7 years ago
• phenopolis / phenopolis_genomics_browser

  View on GitHub
  Python API and React frontend for the Phenopolis Genomics Browser
  ☆31Mar 27, 2024Updated last year
• 0xTCG / aldy

  View on GitHub
  Allelic decomposition and exact genotyping of highly polymorphic and structurally variant genes
  ☆67Jan 8, 2026Updated last month
• Oshlack / STRetch

  View on GitHub
  Method for detecting STR expansions from short-read sequencing data
  ☆63Dec 15, 2021Updated 4 years ago
• opencb / iva

  View on GitHub
  Generic Interactive Variant Analysis browser
  ☆29Apr 12, 2022Updated 3 years ago
• LUMC / kPAL

  View on GitHub
  Analysis toolkit and programming library for k-mer profiles
  ☆31Mar 11, 2021Updated 4 years ago
• DecodeGenetics / popSTR

  View on GitHub
  PopSTR - A Population based microsatellite genotyper
  ☆32Oct 23, 2023Updated 2 years ago
• multiz / multiz

  View on GitHub
  DNA multiple sequence aligner, official version from Penn State's Miller Lab
  ☆36Mar 27, 2019Updated 6 years ago
• NinaGXie / SADDLE

  View on GitHub
  ☆34Apr 25, 2022Updated 3 years ago
• TravisWheelerLab / ULTRA

  View on GitHub
  ULTRA Locates Tandemly Repetitive Areas
  ☆41Oct 23, 2025Updated 3 months ago