Nazeeefa / awesome-sequencing-techLinks
A collection of publications on comparison of high-throughput sequencing technologies.
☆27Updated last week
Alternatives and similar repositories for awesome-sequencing-tech
Users that are interested in awesome-sequencing-tech are comparing it to the libraries listed below
Sorting:
- A method for variant graph genotyping based on exact alignment of k-mers☆87Updated 6 years ago
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆51Updated 3 years ago
- A collection of modules and sub-workflows for Nextflow☆28Updated last month
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- RUFUS k-mer based genomic variant detection☆54Updated 2 weeks ago
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated 6 months ago
- vembrane filters VCF records using python expressions☆66Updated 2 months ago
- Scalable long read self-correction and assembly polishing with multiple sequence alignment☆53Updated last year
- simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.☆44Updated 2 years ago
- Various scripts and recipes for working with nanopore data☆34Updated 9 years ago
- Structural variant (SV) analysis tools☆39Updated last year
- Fast FASTQ sample demultiplexing in Rust.☆66Updated last week
- Reference-free variant discovery in large eukaryotic genomes☆41Updated 4 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆50Updated 6 years ago
- Hitting associations with k-mers☆44Updated 3 years ago
- Structural Variant Prediction Viewer☆35Updated 8 years ago
- BigWig and BAM utilities☆99Updated last year
- Pipeline for de novo clustering of long transcriptomic reads☆26Updated 3 years ago
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- (WIP) best-practices workflow for rare disease☆62Updated last year
- Params validation plugin for Nextflow pipelines☆48Updated last year
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 6 years ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated last year
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Updated 4 months ago
- Master of Pores 2☆23Updated last year
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆58Updated 3 months ago
- REINDEER REad Index for abuNDancE quERy☆56Updated 5 months ago
- Population-wide Deletion Calling☆35Updated 7 months ago
- ☆49Updated last year