A collection of publications on comparison of high-throughput sequencing technologies.
☆27Dec 3, 2025Updated 8 months ago
Alternatives and similar repositories for awesome-sequencing-tech
Users that are interested in awesome-sequencing-tech are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆16May 21, 2026Updated 2 months ago
- This repository contains the reference genome assembly Ash1, built from data collected from an Ashkenazi individual.☆12Feb 2, 2022Updated 4 years ago
- TheSparkBox is an all-in-one Spark deployment that you can use to fire up a local cluster.☆12Jun 26, 2018Updated 8 years ago
- Portable Crystal binary distributions for Linux on x86_64☆15Mar 22, 2021Updated 5 years ago
- Archived version 1.0.2☆16Nov 25, 2019Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- An optimal space run-length Burrows-Wheeler transform full-text index☆27Oct 28, 2021Updated 4 years ago
- INC-Seq: Accurate single molecule reads using nanopore sequencing☆16Sep 11, 2020Updated 5 years ago
- ☆17Sep 24, 2013Updated 12 years ago
- Fast approximation of similarity for sets of very different sizes☆20Mar 8, 2022Updated 4 years ago
- Heterogeneity-incorporating Workflow ApplicationMaster for YARN☆26Oct 31, 2017Updated 8 years ago
- Bacterial typing pipeline for clinical NGS data. Written in NextFlow, Python & Bash.☆16Jul 6, 2026Updated last month
- The first deep learning based Nanopore simulator which can simulate the process of Nanopore sequencing.☆122Oct 20, 2020Updated 5 years ago
- ☆21Nov 1, 2019Updated 6 years ago
- variant discovery and annotation using GATK and Ensembl☆17Jun 27, 2013Updated 13 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Workflow for MAG quality assessment and taxonomical annotation.☆15May 26, 2026Updated 2 months ago
- ☆20Aug 18, 2020Updated 5 years ago
- Pre-mAsking Long reads for Mobile Element inseRtion☆21Jul 24, 2026Updated 2 weeks ago
- Printing text using protein structures☆14Aug 9, 2021Updated 5 years ago
- A Go implementation of the strobemers (https://github.com/ksahlin/strobemers)☆14Apr 23, 2021Updated 5 years ago
- AStarix: Fast and Optimal Sequence-to-Graph Aligner☆74Dec 25, 2021Updated 4 years ago
- The repository keeps the files for an IPython notebook on about how to make a simple genome assembler using python☆30May 10, 2018Updated 8 years ago
- This repository contains data indexes from NIST's Genome in a Bottle project.☆271Nov 30, 2023Updated 2 years ago
- Import a CWL workflow specification to Nextflow script (experimental)☆27Aug 9, 2018Updated 8 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Pan-genomic sequence analysis☆46Jul 11, 2022Updated 4 years ago
- Experimental plugin to integrate GPT like prompt into Nextflow☆17Apr 15, 2024Updated 2 years ago
- k-mer similarity analysis pipeline☆24Jul 27, 2026Updated 2 weeks ago
- BITS: Binary Interval Search☆26Jun 30, 2026Updated last month
- A nf-core pipeline for untargeted whole genome reconstruction with iSNV detection from metagenomic samples.☆40Aug 4, 2026Updated last week
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Dec 3, 2024Updated last year
- This repository contains the code for reproducing all the results and figures from the preprint "Isoform specificity in the mouse primary…☆16Jul 16, 2021Updated 5 years ago
- ☆18Feb 19, 2026Updated 5 months ago
- NanoSim-H: a simulator of Oxford Nanopore reads; a fork of NanoSim.☆18Sep 7, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Scrappie is a technology demonstrator for the Oxford Nanopore Research Algorithms group☆94Jan 13, 2022Updated 4 years ago
- Evaluation of the effect of quantification choices on RNA velocity estimates☆28Nov 6, 2021Updated 4 years ago
- Parallelised and automated construction of metagenomic classifier databases of different tools☆22Jul 25, 2026Updated 2 weeks ago
- Graph-based mapping of long sequences, noisy or HiFi.☆55Oct 5, 2020Updated 5 years ago
- The official repository of the Bioconductor 2019 Conference Workshops☆25Mar 15, 2023Updated 3 years ago
- An R package with over 50 highly cited, read-to-use, up-to-date COVID-19 pandemic data resources☆60Jul 23, 2026Updated 3 weeks ago
- Graphical Fragment Assembly (GFA) Format Specification☆221Aug 21, 2024Updated last year