INC-Seq: Accurate single molecule reads using nanopore sequencing
☆16Sep 11, 2020Updated 5 years ago
Alternatives and similar repositories for INC-Seq
Users that are interested in INC-Seq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Feb 3, 2023Updated 3 years ago
- A tool to examine duplicate read characteristics in a BAM file☆12Dec 8, 2017Updated 8 years ago
- Pipeline for Illumina shotgun sequencing of 16S rRNA amplicon sequences☆14Sep 2, 2016Updated 9 years ago
- Software for Nanopore Analysis☆10Mar 14, 2018Updated 8 years ago
- Pipeline for poreathon☆14Dec 17, 2014Updated 11 years ago
- Library of sketching functions used by PopPUNK☆31Mar 31, 2025Updated 11 months ago
- Software accompanying "HINGE: Long-Read Assembly Achieves Optimal Repeat Resolution"☆64Oct 15, 2020Updated 5 years ago
- Parametric sweep of simulated microbial communities and metagenomic sequencing.☆11Jul 15, 2022Updated 3 years ago
- DNA assembler developed on FER (Croatia), RBI (Croatia) and GIS (Singapore)☆18Jan 18, 2016Updated 10 years ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Feb 25, 2021Updated 5 years ago
- GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…☆70Aug 30, 2022Updated 3 years ago
- Scripts for building the ARTIC lab-on-an-SSD☆11Sep 9, 2020Updated 5 years ago
- ☆16Feb 19, 2026Updated last month
- An Oxford Nanopore Basecaller☆70Sep 4, 2021Updated 4 years ago
- Infrastructure code to support DNA pipeline☆38May 5, 2015Updated 10 years ago
- UCSC Nanopore☆44Aug 11, 2019Updated 6 years ago
- Assembly methods for nanopore-based metagenomic sequencing: a comparative study☆17May 18, 2020Updated 5 years ago
- Improved Phased Assembler☆28Mar 11, 2022Updated 4 years ago
- Pipeline to run qiime2 with snakemake☆18Apr 17, 2020Updated 5 years ago
- Multi-nucleotide variants (MNVs) in gnomAD 2.1☆12Feb 27, 2026Updated 3 weeks ago
- Genome Pair Rapid Dotter☆67Sep 2, 2021Updated 4 years ago
- Bioinformatic Tools for analyzing targeted amplicon sequencing developed by Nicholas Hathaway of Bailey Lab☆17Updated this week
- Stitch together Nanopore tiled amplicon data without polishing a reference☆17Jan 29, 2024Updated 2 years ago
- NCBI-style taxdump files for International Committee on Taxonomy of Viruses (ICTV)☆22May 3, 2025Updated 10 months ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆40Sep 17, 2025Updated 6 months ago
- ☆81Oct 27, 2020Updated 5 years ago
- A needle plot for mutation data☆27Aug 31, 2017Updated 8 years ago
- Sorts amplicons from Nanopore sequencing data based on similarity☆41Oct 9, 2025Updated 5 months ago
- Module to determine where repeats are and make soft-masks of said☆10Mar 14, 2024Updated 2 years ago
- Making diploid assembly becomes common practice for genomic study☆30Oct 2, 2017Updated 8 years ago
- Write-once-read-many table for large datasets.☆27Oct 5, 2023Updated 2 years ago
- Rapid estimation of phylogenetic trees using sketching☆13Feb 18, 2025Updated last year
- Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2☆29Feb 3, 2020Updated 6 years ago
- NaS is a hybrid approach developped to take advantage of data generated using MinION device. We combine Illumina and Oxford Nanopore tech…☆15Mar 28, 2017Updated 8 years ago
- Genome comparison via de Bruijn graph. To get the latest stable version, please visit our site.☆69Oct 29, 2020Updated 5 years ago
- Location of structural errors in a genome assembly and structural variations between a pair of genomes☆11Sep 27, 2019Updated 6 years ago
- FinalVersions☆17Apr 3, 2017Updated 8 years ago
- Interact with CSV files as Python objects☆20Nov 5, 2013Updated 12 years ago
- Bayesian Markov Model motif discovery - An expectation maximization algorithm for the de novo discovery of enriched motifs as modelled by…☆20Oct 5, 2017Updated 8 years ago