ChrisHIV / shiver
Sequences from HIV Easily Reconstructed
☆25Updated 6 months ago
Related projects ⓘ
Alternatives and complementary repositories for shiver
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 5 years ago
- benchmarking and containerization of tools for analysis of complex non-clinical metagenomes.☆21Updated 6 years ago
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 3 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 5 years ago
- Using kallisto for metagenomic analysis☆50Updated 7 years ago
- SARS-CoV-2 variant calling and consensus assembly pipeline☆24Updated last year
- PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…☆25Updated last year
- Classify sequencing reads using MinHash.☆48Updated 4 years ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 5 years ago
- ☆19Updated 7 years ago
- Scripts for implementing read until and other examples.☆31Updated 4 years ago
- A tool to reduce the size of Oxford Nanopore Technologies' datasets without losing information☆31Updated 11 months ago
- Simka and SimkaMin are comparative metagenomics methods dedicated to NGS datasets.☆45Updated 2 years ago
- A list of weak Bacterial assemblies in GenBank☆18Updated 7 years ago
- Kraken2 Server☆21Updated 9 months ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆46Updated 2 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 4 years ago
- An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.☆22Updated 3 years ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆29Updated 3 years ago
- A method of assessing sequence complexity based on kmer frequencies☆28Updated 6 years ago
- Systematic ProtEin AnnotatoR☆19Updated 3 weeks ago
- adds sample names and read-group (RG) tags to BAM alignments☆52Updated 3 years ago
- Calculates the lowest common ancestors of each query sequence in a Blast result☆31Updated 7 years ago
- A small python program to simulate a real-time Nanopore sequencing run based on a previous experiment.☆19Updated 6 years ago
- Output FASTQ summary statistics in JSON format☆29Updated 2 years ago
- Exploration of controlled loss of quality values for compressing CRAM files☆34Updated last year
- A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies☆31Updated 4 months ago
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆26Updated 4 months ago
- Interactive tools for metagenome visualization and binning in R☆28Updated 6 years ago