ChrisHIV / shiverLinks
Sequences from HIV Easily Reconstructed
☆28Updated last year
Alternatives and similar repositories for shiver
Users that are interested in shiver are comparing it to the libraries listed below
Sorting:
- A tool to reduce the size of Oxford Nanopore Technologies' datasets without losing information☆30Updated 2 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 6 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆46Updated 6 years ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- adds sample names and read-group (RG) tags to BAM alignments☆51Updated 5 years ago
- Experimental pipeline for correcting nanopore reads☆39Updated 8 years ago
- Scripts for implementing read until and other examples.☆31Updated 5 years ago
- A toolkit for annotation of transposable element families from unassembled sequence reads☆31Updated 3 weeks ago
- An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.☆22Updated 4 years ago
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 4 years ago
- Estimating k-mer coverage histogram of genomics data☆77Updated 2 years ago
- A C++ header-only library for reading Oxford Nanopore Fast5 files☆53Updated 3 years ago
- Genome guided re-segmention and visualization for raw nanopore sequencing data.☆47Updated 7 years ago
- ☆30Updated last year
- Various scripts and recipes for working with nanopore data☆34Updated 9 years ago
- Code for nanopore paper☆33Updated 10 years ago
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆51Updated 3 years ago
- REINDEER REad Index for abuNDancE quERy☆56Updated 6 months ago
- ☆27Updated 2 weeks ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆47Updated 3 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆58Updated 3 months ago
- Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.☆50Updated 4 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 7 years ago
- Whole Exome/Whole Genome Sequencing alignment pipeline☆29Updated last year
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 7 years ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- create a gemini-compatible database from a VCF☆55Updated 5 years ago
- Merge transcriptome assemblies☆31Updated 9 years ago
- Find Unique genomic Regions☆32Updated 2 months ago
- Error correction for Oxford Nanopore data☆47Updated 4 years ago