ChrisHIV / shiverLinks
Sequences from HIV Easily Reconstructed
☆28Updated last year
Alternatives and similar repositories for shiver
Users that are interested in shiver are comparing it to the libraries listed below
Sorting:
- Accurate, resource-frugal and deterministic DNA sequence classifier.☆36Updated 3 weeks ago
- A tool to reduce the size of Oxford Nanopore Technologies' datasets without losing information☆30Updated 2 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 6 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆46Updated 6 years ago
- Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories☆38Updated 3 weeks ago
- ☆30Updated last year
- A resistome profiler for Graphing Resistance Out Of meTagenomes☆65Updated 5 years ago
- PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…☆25Updated 2 years ago
- Scripts for implementing read until and other examples.☆31Updated 5 years ago
- The final version 2 release of our software to detect core genes in eukaryotic genomes☆29Updated 10 years ago
- NaS is a hybrid approach developped to take advantage of data generated using MinION device. We combine Illumina and Oxford Nanopore tech…☆15Updated 8 years ago
- Get microbial sequence data easier and faster☆28Updated 6 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 7 years ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- ☆18Updated 8 years ago
- benchmarking and containerization of tools for analysis of complex non-clinical metagenomes.☆21Updated 7 years ago
- Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.☆50Updated 4 years ago
- Antibiotic resistance predictions in minutes on a laptop☆50Updated 6 years ago
- A list of weak Bacterial assemblies in GenBank☆18Updated 8 years ago
- Simka and SimkaMin are comparative metagenomics methods dedicated to NGS datasets.☆51Updated 3 years ago
- De novo Extraction of Strains from MetAgeNomes☆71Updated 5 years ago
- Accurate read-based metagenome characterization using a hierarchical suite of unique signatures. Please visit our homepage:☆23Updated 6 years ago
- CRyPTIC data processing pipelines☆34Updated last year
- Find Unique genomic Regions☆32Updated 2 months ago
- A method of assessing sequence complexity based on kmer frequencies☆33Updated 7 years ago
- Algorithm to divide a phylogenetic tree into segments based on phenotypes at the leaves of the tree☆25Updated 7 years ago
- REINDEER REad Index for abuNDancE quERy☆56Updated 5 months ago
- annotation pipeline for microbial genomes and metagenomes☆18Updated 7 years ago
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 4 years ago