genome-in-a-bottle / giab_data_indexesView external linksLinks
This repository contains data indexes from NIST's Genome in a Bottle project.
☆264Nov 30, 2023Updated 2 years ago
Alternatives and similar repositories for giab_data_indexes
Users that are interested in giab_data_indexes are comparing it to the libraries listed below
Sorting:
- RTG Tools: Utilities for accurate VCF comparison and manipulation☆332May 27, 2025Updated 8 months ago
- Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls☆207Mar 19, 2021Updated 4 years ago
- Haplotype VCF comparison tools☆455Dec 7, 2023Updated 2 years ago
- Toolset for SV simulation, comparison and filtering☆411Dec 1, 2023Updated 2 years ago
- This repository contains information about latest release from Genome in a Bottle project☆75Aug 30, 2019Updated 6 years ago
- Plot structural variant signals from many BAMs and CRAMs☆558Jul 13, 2024Updated last year
- Structural variant toolkit for VCFs☆397Jan 23, 2026Updated 3 weeks ago
- Bayesian haplotype-based mutation calling☆323Feb 10, 2026Updated last week
- Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling☆331Updated this week
- genotype :: ped correspondence check, ancestry check, sex check. directly, quickly on VCF☆145Jul 14, 2025Updated 7 months ago
- Compare assembly graph file formats☆16Jul 23, 2015Updated 10 years ago
- tools for adding mutations to existing .bam files, used for testing mutation callers☆247Oct 18, 2024Updated last year
- PEPPER-Margin-DeepVariant☆257Jan 12, 2024Updated 2 years ago
- Structural variation caller using third generation sequencing☆634Dec 18, 2025Updated last month
- Clair: Exploring the limit of using deep neural network on pileup data for germline variant calling☆105Sep 1, 2022Updated 3 years ago
- This repository contains a list of tools or methods that have been used in GIAB analysis☆29Nov 15, 2019Updated 6 years ago
- Data and analysis for NA12878 genome on nanopore☆402Nov 22, 2022Updated 3 years ago
- Long read based human genomic structural variation detection with cuteSV☆277Sep 30, 2025Updated 4 months ago
- vcfdist: Accurately benchmarking phased variant calls☆84Sep 17, 2025Updated 5 months ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Jul 21, 2019Updated 6 years ago
- Jasmine: SV Merging Across Samples☆240Dec 20, 2024Updated last year
- Methods to integrate data from multiple genome sequencing datasets and form consensus variant calls☆45Jan 26, 2022Updated 4 years ago
- Microassembly based somatic variant caller for NGS data☆154Jun 23, 2022Updated 3 years ago
- ☆25Apr 29, 2018Updated 7 years ago
- Population-scale genotyping using pangenome graphs☆195Jan 9, 2025Updated last year
- Annotation and Ranking of Structural Variation☆287Oct 7, 2025Updated 4 months ago
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆279May 21, 2025Updated 8 months ago
- sort genomic data☆36Nov 7, 2025Updated 3 months ago
- ☆55Jun 24, 2020Updated 5 years ago
- fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing☆822Updated this week
- annotate a VCF with other VCFs/BEDs/tabixed files☆396Aug 30, 2025Updated 5 months ago
- The Platinum Genomes Truthset☆90Nov 8, 2017Updated 8 years ago
- Scalable gVCF merging and joint variant calling for population sequencing projects☆175Apr 12, 2024Updated last year
- VarDict☆201Jan 5, 2024Updated 2 years ago
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Feb 3, 2021Updated 5 years ago
- Flexible genotype query among 30,000+ samples whole-genome☆94Sep 4, 2019Updated 6 years ago
- Strelka2 germline and somatic small variant caller☆389Dec 29, 2021Updated 4 years ago
- Read visualizer for structural variants☆84Aug 18, 2018Updated 7 years ago
- A tool set for short variant discovery in genetic sequence data.☆204May 4, 2021Updated 4 years ago