This repository contains data indexes from NIST's Genome in a Bottle project.
☆266Nov 30, 2023Updated 2 years ago
Alternatives and similar repositories for giab_data_indexes
Users that are interested in giab_data_indexes are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- RTG Tools: Utilities for accurate VCF comparison and manipulation☆335May 27, 2025Updated last year
- Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls☆212Mar 19, 2021Updated 5 years ago
- This repository contains information about latest release from Genome in a Bottle project☆75Aug 30, 2019Updated 6 years ago
- Haplotype VCF comparison tools☆467Dec 7, 2023Updated 2 years ago
- Toolset for SV simulation, comparison and filtering☆420Dec 1, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Plot structural variant signals from many BAMs and CRAMs☆566Jul 13, 2024Updated last year
- Bayesian haplotype-based mutation calling☆323Feb 13, 2026Updated 3 months ago
- This repository contains a list of tools or methods that have been used in GIAB analysis☆29Nov 15, 2019Updated 6 years ago
- PEPPER-Margin-DeepVariant☆258Jan 12, 2024Updated 2 years ago
- Clair3 - Symphonizing pileup and full-alignment for deep learning-based long-read variant calling☆363May 4, 2026Updated 3 weeks ago
- genotype :: ped correspondence check, ancestry check, sex check. directly, quickly on VCF☆150Feb 17, 2026Updated 3 months ago
- tools for adding mutations to existing .bam files, used for testing mutation callers☆249Oct 18, 2024Updated last year
- Structural variant toolkit for VCFs☆411May 22, 2026Updated last week
- Compare assembly graph file formats☆16Jul 23, 2015Updated 10 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Clair: Exploring the limit of using deep neural network on pileup data for germline variant calling☆105Sep 1, 2022Updated 3 years ago
- Human Pangenome Reference Consortium - HG002 Data Freeze (v1.0)☆83Jun 10, 2022Updated 3 years ago
- Structural variation caller using third generation sequencing☆658May 18, 2026Updated last week
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Jul 21, 2019Updated 6 years ago
- Data and analysis for NA12878 genome on nanopore