genome-in-a-bottle / giab_data_indexesLinks
This repository contains data indexes from NIST's Genome in a Bottle project.
☆254Updated last year
Alternatives and similar repositories for giab_data_indexes
Users that are interested in giab_data_indexes are comparing it to the libraries listed below
Sorting:
- RTG Tools: Utilities for accurate VCF comparison and manipulation☆323Updated 3 months ago
- Count bases in BAM/CRAM files☆319Updated 3 years ago
- Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls☆204Updated 4 years ago
- Reads simulator☆282Updated 3 years ago
- Toolset for SV simulation, comparison and filtering☆395Updated last year
- structural variant calling and genotyping with existing tools, but, smoothly.☆257Updated last year
- Bayesian haplotype-based mutation calling☆318Updated 3 weeks ago
- Structural variation and indel detection by local assembly☆247Updated last month
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆271Updated 3 months ago
- A tool for estimating repeat sizes☆196Updated last year
- Annotation and Ranking of Structural Variation☆262Updated last week
- A structural variation pipeline for short-read sequencing☆192Updated last week
- Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling☆298Updated 3 weeks ago
- annotate a VCF with other VCFs/BEDs/tabixed files☆383Updated last month
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆275Updated 6 months ago
- Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants …☆174Updated 5 years ago
- VarDict☆198Updated last year
- a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads☆226Updated 3 years ago
- A tool set for short variant discovery in genetic sequence data.☆200Updated 4 years ago
- Structural variant toolkit for VCFs☆374Updated 3 weeks ago
- Workflows for germline short variant discovery with GATK4☆138Updated 4 years ago
- software tools for haplotype assembly from sequence data☆223Updated 6 months ago
- Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data☆211Updated 5 years ago
- tools for adding mutations to existing .bam files, used for testing mutation callers☆244Updated 10 months ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆284Updated 10 months ago
- Workflows for processing high-throughput sequencing data for variant discovery with GATK4 and related tools☆155Updated 3 years ago
- An overview of all nanopack tools☆267Updated 2 years ago
- The nimble & robust variant annotator☆184Updated last year
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆162Updated 2 years ago
- This Snakemake pipeline implements the GATK best-practices workflow☆257Updated 2 years ago