This repository contains data indexes from NIST's Genome in a Bottle project.
☆265Nov 30, 2023Updated 2 years ago
Alternatives and similar repositories for giab_data_indexes
Users that are interested in giab_data_indexes are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- RTG Tools: Utilities for accurate VCF comparison and manipulation☆335May 27, 2025Updated 11 months ago
- Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls☆210Mar 19, 2021Updated 5 years ago
- This repository contains information about latest release from Genome in a Bottle project☆75Aug 30, 2019Updated 6 years ago
- Haplotype VCF comparison tools☆465Dec 7, 2023Updated 2 years ago
- Toolset for SV simulation, comparison and filtering☆416Dec 1, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Plot structural variant signals from many BAMs and CRAMs☆567Jul 13, 2024Updated last year
- Bayesian haplotype-based mutation calling☆323Feb 13, 2026Updated 2 months ago
- This repository contains a list of tools or methods that have been used in GIAB analysis☆29Nov 15, 2019Updated 6 years ago
- PEPPER-Margin-DeepVariant☆258Jan 12, 2024Updated 2 years ago
- Clair3 - Symphonizing pileup and full-alignment for deep learning-based long-read variant calling☆359Updated this week
- genotype :: ped correspondence check, ancestry check, sex check. directly, quickly on VCF☆149Feb 17, 2026Updated 2 months ago
- tools for adding mutations to existing .bam files, used for testing mutation callers☆248Oct 18, 2024Updated last year
- Structural variant toolkit for VCFs☆407Mar 21, 2026Updated last month
- Compare assembly graph file formats☆16Jul 23, 2015Updated 10 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Clair: Exploring the limit of using deep neural network on pileup data for germline variant calling☆105Sep 1, 2022Updated 3 years ago
- Human Pangenome Reference Consortium - HG002 Data Freeze (v1.0)☆80Jun 10, 2022Updated 3 years ago
- Structural variation caller using third generation sequencing☆651Apr 2, 2026Updated last month
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Jul 21, 2019Updated 6 years ago
- Data and analysis for NA12878 genome on nanopore☆405Nov 22, 2022Updated 3 years ago
- VarDict☆203Jan 5, 2024Updated 2 years ago
- Data from the Human PanGenomics Project☆61Jul 15, 2021Updated 4 years ago
- Methods to integrate data from multiple genome sequencing datasets and form consensus variant calls☆45Jan 26, 2022Updated 4 years ago
- ☆55Jun 24, 2020Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- vcfdist: Accurately benchmarking phased variant calls☆85Feb 23, 2026Updated 2 months ago
- Read visualizer for structural variants☆84Aug 18, 2018Updated 7 years ago
- Long read based human genomic structural variation detection with cuteSV☆286Mar 26, 2026Updated last month
- fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing☆846May 2, 2026Updated last week
- The Platinum Genomes Truthset☆90Nov 8, 2017Updated 8 years ago
- A BioWDL variantcalling pipeline for germline DNA data. Starting with FASTQ files to produce VCF files. Category:Multi-Sample☆26May 4, 2023Updated 3 years ago
- ☆25Apr 29, 2018Updated 8 years ago
- Jasmine: SV Merging Across Samples☆251Dec 20, 2024Updated last year
- Clair3-Trio: variant calling in trio using Nanopore long-reads☆16Apr 18, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Fast HLA type inference from whole-genome data☆145Apr 3, 2025Updated last year
- Annotation and Ranking of Structural Variation☆295Apr 16, 2026Updated 3 weeks ago
- ☆11Jul 13, 2018Updated 7 years ago
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Feb 3, 2021Updated 5 years ago
- annotate a VCF with other VCFs/BEDs/tabixed files☆401May 1, 2026Updated last week
- SNP-Assisted SV Calling and Phasing Using ONT☆25Jul 9, 2023Updated 2 years ago
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆283May 21, 2025Updated 11 months ago