BenLangmead / aws-indexes
Catalog of genomic indexes freely available from public clouds
☆60Updated 2 weeks ago
Alternatives and similar repositories for aws-indexes:
Users that are interested in aws-indexes are comparing it to the libraries listed below
- A scalable bacterial genome assembly, annotation and analysis pipeline☆73Updated last year
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆117Updated last year
- A fast whole-genome aligner based on de Bruijn graphs☆146Updated 2 months ago
- a tool for inferring species tree from sequencing reads☆149Updated 2 months ago
- A snakemake-based pipeline for assembling and polishing long genomes from long nanopore reads☆69Updated 3 years ago
- Snakemake workflow for metagenomic classification with Kraken2☆65Updated last year
- Research release basecalling models and configurations☆110Updated 10 months ago
- SKESA assembler☆116Updated 6 months ago
- Python programs for processing GFF3 files☆96Updated last year
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆114Updated last month
- De novo assembly from Oxford Nanopore reads.☆83Updated last week
- Pairwise SNP distance matrix from a FASTA sequence alignment☆135Updated last year
- Interactive quality assessment of genome assemblies☆99Updated 3 weeks ago
- Protein hint generation pipeline for gene finding in eukaryotic genomes☆56Updated last year
- Nextflow pipeline for analysis of direct RNA Nanopore reads☆101Updated last week
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆160Updated last year
- List of genome assembly tools☆65Updated 3 weeks ago
- A tool for representing genomic potential and transcriptomic expression into KEGG pathways☆54Updated 8 months ago
- Antibiotic resistance prediction in minutes☆108Updated 5 months ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆90Updated 3 years ago
- Pipeline for metabolic annotation of microbial genomes☆144Updated last month
- Aligns short reads using dynamic seed size with strobemers☆167Updated 2 weeks ago
- ☆81Updated last year
- A post sequencing QC tool for Oxford Nanopore sequencers☆96Updated last month
- DDBJ Fast Annotation and Submission Tool☆80Updated 2 months ago
- Basecalling, alignment, assembly and deconvolution of Sanger Chromatogram trace files☆108Updated last month
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆139Updated 2 weeks ago
- Assembly and intrahost/low-frequency variant calling for viral samples☆137Updated 2 weeks ago
- Metagenomic classification of long-read sequencing data☆81Updated 2 weeks ago