Catalog of genomic indexes freely available from public clouds
☆75Sep 21, 2026Updated last week
Alternatives and similar repositories for aws-indexes
Users that are interested in aws-indexes are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The NCBI SARS-CoV-2 Variant Calling (SC2VC) Pipeline allows calling high-confidence variants from SARS-CoV-2 NGS data in a standardized f…☆14Apr 21, 2023Updated 3 years ago
- Host depletion optimised for clinical metagenomic sequencing applications☆19Jul 9, 2026Updated 2 months ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆91Sep 9, 2026Updated 2 weeks ago
- A pipeline for bioinformatics analysis of bacterial genomes☆34Jul 17, 2026Updated 2 months ago
- ☆12Nov 23, 2020Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Reorients assembled microbial sequences☆146Jun 30, 2026Updated 2 months ago
- The second version of the Kraken taxonomic sequence classification system☆941Updated this week
- 🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission☆29Updated this week
- Output FASTQ summary statistics in JSON format☆29Oct 30, 2022Updated 3 years ago
- Assemble bacterial isolate genomes from Nanopore reads☆136Jan 22, 2025Updated last year
- A tool for generating consensus long-read assemblies for bacterial genomes☆349Jul 24, 2026Updated 2 months ago
- Parser for Ghost Koala☆10Aug 23, 2018Updated 8 years ago
- StxTyper uses a standardized algorithm to accurately type both known and unknown Shiga toxin operons from assembled genomic sequence.☆19Aug 28, 2026Updated last month
- Graph-based assembly phasing☆102Nov 25, 2025Updated 10 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Hybrid Assembler for Plasmids☆10Jul 28, 2022Updated 4 years ago
- Accurate metagenomic profiling && Fast large-scale sequence/genome searching☆222Apr 24, 2026Updated 5 months ago
- Repository with materials for the Speeding Up Science Workshops at UC Davis☆10Oct 31, 2019Updated 6 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆16Jun 26, 2018Updated 8 years ago
- taxonomic classifier based on the kraken2 algorithms and more☆46Dec 12, 2025Updated 9 months ago
- HyGen: Compact and Efficient Genome Sketching using Hyperdimensional Vectors☆34Aug 26, 2024Updated 2 years ago
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆384Aug 1, 2025Updated last year
- CRyPTIC data processing pipelines☆36Jul 18, 2024Updated 2 years ago
- A curated database of completed assemblies with taxonomy IDs☆53Aug 31, 2026Updated 3 weeks ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- in silico plasmid extraction☆13Sep 18, 2017Updated 9 years ago
- Read contamination removal☆25Jan 24, 2024Updated 2 years ago
- Python Toolkit for using containerized programs in either Singularity or Docker☆31Mar 19, 2024Updated 2 years ago
- PHANTASM: PHylogenomic ANalyses for the TAxonomy and Systematics of Microbes☆26Dec 4, 2023Updated 2 years ago
- Targeted Detection and Reconstruction of Plasmids☆22May 7, 2024Updated 2 years ago
- Cluster informed Shigella and EIEC serotyping tool from Illumina reads and assemblies☆14Jun 30, 2023Updated 3 years ago
- This is the webpage of the ESGEM-AMR Working Group☆16Updated this week
- Documentation for PEP specification and all PEPkit software☆10Updated this week
- Precise host read removal☆132Apr 13, 2026Updated 5 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Plotting scripts for long read sequencing data☆560Sep 5, 2026Updated 3 weeks ago
- Plasmid analysis using rearrangement distances☆56Jul 19, 2026Updated 2 months ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆264May 13, 2026Updated 4 months ago
- FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomi…☆68Jun 4, 2026Updated 3 months ago
- 🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results☆253Jan 18, 2024Updated 2 years ago
- Slow5tools is a toolkit for converting (FAST5 <-> SLOW5), compressing, viewing, indexing and manipulating data in SLOW5 format.☆106Aug 26, 2026Updated last month
- COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)☆22Nov 24, 2024Updated last year