Alternatives and similar repositories for aws-indexes

Users that are interested in aws-indexes are comparing it to the libraries listed below

• DessimozLab / read2tree
  a tool for inferring species tree from sequencing reads
  ☆152Updated last week
• bhattlab / kraken2_classification
  Snakemake workflow for metagenomic classification with Kraken2
  ☆65Updated 2 years ago
• ogotoh / spaln
  Genome mapping and spliced alignment of cDNA or amino acid sequences
  ☆105Updated 4 months ago
• Mykrobe-tools / mykrobe
  Antibiotic resistance prediction in minutes
  ☆112Updated 10 months ago
• oschwengers / asap
  A scalable bacterial genome assembly, annotation and analysis pipeline
  ☆74Updated last year
• CompSynBioLab-KoreaUniv / FunGAP
  FunGAP: fungal Genome Annotation Pipeline
  ☆111Updated 4 months ago
• nadegeguiglielmoni / genome_assembly_tools
  List of genome assembly tools
  ☆78Updated last week
• epi2me-labs / wf-metagenomics
  Metagenomic classification of long-read sequencing data
  ☆95Updated 3 weeks ago
• nanoporetech / rerio
  Research release basecalling models and configurations
  ☆114Updated 4 months ago
• mjsull / Easyfig
  Development version of Easyfig
  ☆100Updated last year
• neherlab / pan-genome-analysis
  Processing pipeline for pan-genome visulization and exploration
  ☆140Updated 2 years ago
• aresti / primalscheme
  a tool for designing primer panels for multiplex PCR.
  ☆105Updated last year
• bhattlab / lathe
  A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing
  ☆69Updated 4 years ago
• EBI-Metagenomics / emg-viral-pipeline
  VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies
  ☆143Updated last month
• AstrobioMike / bit
  Bioinformatics Tools
  ☆90Updated last week
• KatyBrown / CIAlign
  ☆131Updated last year
• art-egorov / lovis4u
  Bioinformatics tool for Locus Visualisation
  ☆124Updated 4 months ago
• wdecoster / nanoQC
  Quality control tools for nanopore sequencing data
  ☆110Updated 11 months ago
• broadinstitute / catch
  A package for designing compact and comprehensive capture probe sets.
  ☆89Updated last year
• iqbal-lab-org / pandora
  Pan-genome inference and genotyping with long noisy or short accurate reads
  ☆118Updated 9 months ago
• fanglab / nanodisco
  nanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nano…
  ☆70Updated 3 years ago
• epi2me-labs / wf-basecalling
  ☆46Updated last week
• bhattlab / MGEfinder
  A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.
  ☆123Updated last year
• genomehubs / blobtoolkit
  Interactive quality assessment of genome assemblies
  ☆109Updated 5 months ago
• shenwei356 / LexicMap
  LexicMap: efficient sequence alignment against millions of prokaryotic genomes
  ☆185Updated 2 weeks ago
• biocorecrg / master_of_pores
  Nextflow pipeline for analysis of direct RNA Nanopore reads
  ☆108Updated 3 months ago
• kblin / ncbi-acc-download
  Download files from NCBI Entrez by accession
  ☆129Updated last year
• gamcil / cblaster
  Find clustered hits from a BLAST search
  ☆121Updated 10 months ago
• replikation / What_the_Phage
  WtP: Phage identification via nextflow and docker or singularity
  ☆105Updated 2 weeks ago
• robotoD / GenoVi
  GenoVi, an automated customizable circular genome visualizer for bacteria and archaea
  ☆97Updated 2 years ago