Alternatives and similar repositories for aMeta

Users that are interested in aMeta are comparing it to the libraries listed below

• uio-cels / NucDiff
  In-depth characterization and annotation of differences between two sets of DNA sequences
  ☆62Updated 5 years ago
• dvdylus / read2tree
  ☆20Updated 3 years ago
• sanger-pathogens / assembly_improvement
  Improve the quality of a denovo assembly by scaffolding and gap filling
  ☆56Updated 4 years ago
• fmalmeida / MpGAP
  Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads
  ☆62Updated 11 months ago
• katerinakazantseva / strainy
  Graph-based assembly phasing
  ☆88Updated 4 months ago
• bcgsc / LongStitch
  🪡Correct and scaffold assemblies using long reads
  ☆55Updated last year
• Arkadiy-Garber / SprayNPray
  Rapid and simple taxonomic profiling of genome and metagenome contigs
  ☆29Updated 2 years ago
• wtmatlock / flanker
  Gene-flank analysis tool
  ☆29Updated 8 months ago
• rrwick / Rebaler
  reference-based long read assemblies of bacterial genomes
  ☆50Updated 4 years ago
• HaploConduct / HaploConduct
  Haplotype-aware genome assembly toolkit
  ☆30Updated 5 years ago
• bacpop / ggCaller
  Bifrost graph gene caller.
  ☆96Updated 11 months ago
• simonrharris / SKA
  Split Kmer Analysis
  ☆65Updated 3 years ago
• marbl / MetaCompass
  MetaCompass: Reference-guided Assembly of Metagenomes
  ☆39Updated 2 weeks ago
• jts / assembly_accuracy
  tools for assessing the accuracy of genome assemblies
  ☆34Updated last year
• mdcao / npScarf
  ☆26Updated 5 years ago
• SouthGreenPlatform / culebrONT
  A snakemake pipeline to assembly, polishing, correction and quality check from Oxford nanopore reads.
  ☆36Updated 4 months ago
• at-cg / mm2-plus
  Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)
  ☆33Updated 2 months ago
• Sanrrone / GGisy
  Genome-Genome circle synteny
  ☆25Updated last year
• phac-nml / refseq_masher
  Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database
  ☆42Updated 4 years ago
• rki-mf1 / clean
  A nextflow pipeline for decontamination of short reads, long reads and contigs
  ☆53Updated 2 months ago
• compgenomicslab / TreeProfiler
  tree visualization for tree + annotation data
  ☆39Updated 2 months ago
• kensung-lab / hypo
  HyPo: Super Fast & Accurate Polisher for Long Read Genome Assemblies
  ☆65Updated 5 years ago
• xfengnefx / hifiasm-meta
  hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.
  ☆68Updated last month
• bioinfo-ut / PlasmidSeeker
  A k-mer based program for the identification of known plasmids from whole-genome sequencing reads
  ☆35Updated 4 years ago
• HuffordLab / GenomeQC
  ☆32Updated 4 years ago
• DrMicrobit / mira
  MIRA sequence assembler
  ☆29Updated 8 months ago
• bacpop / PopPIPE
  Population analysis PIPEline 🛠🧬
  ☆20Updated 4 months ago
• rrwick / Verticall
  Recombination-free trees
  ☆59Updated 5 months ago
• leylabmpi / SynTracker
  SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…
  ☆32Updated last month
• LANL-Bioinformatics / PhaME
  Given a reference, PhaME extracts SNPs from complete genomes, draft genomes and/or reads. Uses SNP multiple sequence alignment to constr…
  ☆33Updated last year