NBISweden / aMetaLinks
Ancient microbiome snakemake workflow
☆26Updated 6 months ago
Alternatives and similar repositories for aMeta
Users that are interested in aMeta are comparing it to the libraries listed below
Sorting:
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆63Updated last year
- In-depth characterization and annotation of differences between two sets of DNA sequences☆62Updated 5 years ago
- HyPo: Super Fast & Accurate Polisher for Long Read Genome Assemblies☆64Updated 5 years ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆58Updated 4 years ago
- A high performance tool to identify orthologs and paralogs across genomes.☆27Updated 2 years ago
- Visualize whole genome alignments as linear maps☆73Updated 2 months ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆56Updated 4 years ago
- Recombination-free trees☆60Updated last month
- k-mer learning materials☆80Updated 7 months ago
- Assembly and scaffolding of haploid / unphased genomes from long ONT or PacBio HiFi reads☆29Updated 3 weeks ago
- ☆20Updated 3 years ago
- Gmove is a gene prediction tool☆21Updated last year
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- MetaCompass: Reference-guided Assembly of Metagenomes☆38Updated 2 months ago
- tools for assessing the accuracy of genome assemblies☆34Updated last year
- Toolkit for preparing genomes for submission to NCBI☆29Updated 4 years ago
- ☆33Updated 4 years ago
- Graph-based assembly phasing☆87Updated 5 months ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆54Updated 2 years ago
- 🪡Correct and scaffold assemblies using long reads☆55Updated last month
- Snakemake workflow for bacterial genome assembly + polishing for Oxford Nanopore (ONT) sequencing using multiple tools.☆27Updated last year
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆35Updated 3 months ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆42Updated 4 years ago
- Genome-Genome circle synteny☆25Updated last year
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated last year
- Automated strain separation of low-complexity metagenomes☆50Updated 3 years ago
- tree visualization for tree + annotation data☆40Updated 3 months ago
- ☆29Updated 4 years ago
- reference-based long read assemblies of bacterial genomes☆51Updated 4 years ago
- FastOMA is a scalable software package to infer orthology relationship.☆83Updated this week