Alternatives and similar repositories for intro-to-ancient-metagenomics-book:

Users that are interested in intro-to-ancient-metagenomics-book are comparing it to the libraries listed below

• peterk87 / nf-flu
  Influenza genome analysis Nextflow workflow
  ☆26Updated 2 weeks ago
• jonas-fuchs / BAMdash
  create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks
  ☆44Updated 8 months ago
• evolbioinfo / booster
  ☆28Updated 4 years ago
• NBISweden / aMeta
  Ancient microbiome snakemake workflow
  ☆24Updated 2 weeks ago
• JLSteenwyk / orthohmm
  Improved Inference of Ortholog Groups using Hidden Markov Models
  ☆33Updated last month
• marbl / MetaCompass
  MetaCompass: Reference-guided Assembly of Metagenomes
  ☆38Updated 4 years ago
• rki-mf1 / clean
  A nextflow pipeline for decontamination of short reads, long reads and contigs
  ☆44Updated 4 months ago
• jonas-fuchs / varVAMP
  Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.
  ☆36Updated 2 months ago
• salzberg-lab / Balrog
  Bacterial Annotation by Learned Representation of Genes
  ☆55Updated 4 years ago
• BeatsonLab-MicrobialGenomics / micropipe
  A pipeline for high-quality bacterial genome construction using ONT sequencing
  ☆39Updated 2 years ago
• ecbush / xenoGI
  Code for detecting genomic island insertions in clades of microbes.
  ☆19Updated last year
• chrisruis / MutTui
  MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets
  ☆29Updated 9 months ago
• hsinnan75 / GSAlign
  GSAlign: an ultra-fast sequence alignment algorithm for intra-species genome comparison
  ☆57Updated last year
• Gabaldonlab / perSVade
  perSVade: personalized Structural Variation detection
  ☆39Updated 2 months ago
• drboothtj / getphylo
  a python package for automated generation of phylogenetic trees from genbank files
  ☆21Updated last month
• compgenomicslab / TreeProfiler
  tree visualization for tree + annotation data
  ☆32Updated this week
• lh3 / jstreeview
  Interactive phylogenetic tree viewer/editor
  ☆46Updated last year
• mblstamps / stamps2022
  Materials for the STAMPS 2022 course at the MBL in Woods Hole, MA, USA
  ☆20Updated 2 years ago
• steineggerlab / conterminator
  Detection of incorrectly labeled sequences across kingdoms
  ☆85Updated 2 years ago
• rrwick / Compare-annotations
  A script for comparing old vs new versions of genome annotations
  ☆20Updated last year
• ZhaoXM-Lab / metaMIC
  Assessing and Improving the quality of metagenomic assemblies
  ☆28Updated 3 years ago
• moshi4 / MGCplotter
  Microbial Genome Circular plotting tool for comparative genomics using Circos
  ☆38Updated 2 years ago
• nvelden / geneviewer
  An R package designed for drawing gene arrow maps
  ☆76Updated this week
• EvolBioInf / fur
  Find Unique genomic Regions
  ☆29Updated 3 weeks ago
• broadinstitute / GATK-for-Microbes
  ☆26Updated 3 years ago
• sanger-pathogens / seroba
  k-mer based Pipeline to identify the Serotype from Illumina NGS reads
  ☆21Updated last year
• JLSteenwyk / BioKIT
  a versatile toolkit for processing and analyzing diverse types of sequence data
  ☆21Updated 4 months ago
• pauloluniyi / VGEA
  VGEA (Viral Genomes Easily Analyzed) is a pipeline for analysis of RNA virus next-generation sequencing data.
  ☆20Updated 3 years ago
• CBC-UCONN / Genome_Assembly
  ☆24Updated last week
• Serka-M / Digester-MultiSequencing
  Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing
  ☆21Updated 2 years ago