mapping pipeline for ancient DNA
☆34Feb 20, 2026Updated last month
Alternatives and similar repositories for mapache
Users that are interested in mapache are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Maximum a posteriori estimate of contamination for ancient samples☆23Nov 4, 2025Updated 5 months ago
- Ancient microbiome snakemake workflow☆28Apr 2, 2026Updated 2 weeks ago
- Damage parameter estimation for ancient DNA☆19Apr 8, 2025Updated last year
- Pipelines and tools for the processing of ancient and modern HTS data.☆50Mar 6, 2026Updated last month
- ☆15Jun 26, 2025Updated 9 months ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆15Mar 13, 2026Updated last month
- A post-mapping authentication toolkit for ancient metagenomics☆19Mar 30, 2026Updated 2 weeks ago
- A fully reproducible and state-of-the-art ancient DNA analysis pipeline☆203Mar 27, 2026Updated 2 weeks ago
- ☆22Jun 9, 2021Updated 4 years ago
- Exploration, clustering, visualization and classification of DNA damage patterns☆19Jan 15, 2021Updated 5 years ago
- Additional supplementary information and code, data repository for Fellows Yates, J.A. et al. (2021) PNAS. DOI: http://dx.doi.org/10.1073…☆14Oct 20, 2021Updated 4 years ago
- Repository containing lists of all published ancient metagenomic (and related) samples and libraries☆80Apr 9, 2026Updated last week
- Introduction to Ancient Metagenomics Book☆15Feb 17, 2026Updated last month
- Visualizing gene tree conflict using Phyparts, and ETE3☆14Jun 17, 2023Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆17Nov 19, 2021Updated 4 years ago
- ☆21Dec 15, 2023Updated 2 years ago
- Course in population genomics at BiRC☆12Mar 18, 2026Updated 3 weeks ago
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆14May 1, 2023Updated 2 years ago
- Workflow for processing Illumina sequencing runs for ancient human DNA☆26Oct 29, 2020Updated 5 years ago
- ☆51Apr 1, 2026Updated 2 weeks ago
- mapDamage: tracking and quantifying damage patterns in ancient DNA sequences☆49Jul 14, 2025Updated 9 months ago
- Pipeline to generate variant catalogues, a list of variants and their frequencies in a population, from whole genome sequences.☆13Jun 3, 2025Updated 10 months ago
- PSMC-based Migration and Split Time Inference (MiSTI) from two genomes☆12Mar 20, 2026Updated 3 weeks ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A guide to manipulating genotypic data across the common formats: VCF, EIGENSTRAT and PLINK (PACKEDPED) files. Includes how to convert be…☆24Aug 9, 2023Updated 2 years ago
- ☆15Dec 3, 2024Updated last year
- Here I show how to use Convolutional Neural Networks (CNNs) for Ancient DNA analysis☆15Apr 24, 2019Updated 6 years ago
- Snakemake workflow for highly parallel variant calling designed for ease-of-use in non-model organisms.☆89Updated this week
- Genotype likelihood simulator for VCF/BCF files☆16May 7, 2025Updated 11 months ago
- This book summarises prepared mini-courses for various computational tools and methods in the field of human archaeogenetic data analysis…☆15Updated this week
- Program for analysing NGS data.☆258Mar 6, 2025Updated last year
- The GitHub for CLUES2, a method for inferring and evaluating evidence for selection.☆18Apr 9, 2025Updated last year
- GONE: Scripts, programs and an example data set☆54Jul 20, 2025Updated 8 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Vector Approximate Message Passing inference framework for GWAS☆19Jan 14, 2026Updated 3 months ago
- A statistical framework for reference-free inference of archaic local ancestry☆16Nov 8, 2019Updated 6 years ago
- A simple tool to calculate metrics from a BAM file and filter references with uneven coverages☆22Jan 29, 2026Updated 2 months ago
- ☆19Sep 20, 2021Updated 4 years ago
- Infer the age of ancestral nodes in a tree sequence.☆25Apr 4, 2026Updated last week
- ☆16Feb 11, 2022Updated 4 years ago
- ☆38Oct 6, 2025Updated 6 months ago