Repository containing lists of all published ancient metagenomic (and related) samples and libraries
☆87Oct 29, 2026Updated this week
Alternatives and similar repositories for AncientMetagenomeDir
Users that are interested in AncientMetagenomeDir are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Ancient microbiome snakemake workflow☆34Jun 12, 2026Updated 4 months ago
- Ancient Metagenome Assembler For Heavily Damaged Datasets☆12Oct 27, 2025Updated last year
- Coprolite host Identification pipeline☆13Oct 7, 2026Updated 3 weeks ago
- Additional supplementary information and code, data repository for Fellows Yates, J.A. et al. (2021) PNAS. DOI: http://dx.doi.org/10.1073…☆13Oct 20, 2021Updated 5 years ago
- ☆15Mar 13, 2026Updated 7 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A fully reproducible and state-of-the-art ancient DNA analysis pipeline☆213Updated this week
- ☆17Nov 19, 2021Updated 4 years ago
- Introduction to Ancient Metagenomics Book☆16Sep 20, 2026Updated last month
- A pipeline for the analysis of sedimentary ancient mtDNA.☆18Aug 26, 2026Updated 2 months ago
- A simple tool to calculate metrics from a BAM file and filter references with uneven coverages☆26Apr 24, 2026Updated 6 months ago
- ☆21Dec 15, 2023Updated 2 years ago
- mapping pipeline for ancient DNA☆34Oct 22, 2026Updated last week
- A Java based tool to determine damage patterns on ancient DNA as a replacement for mapDamage☆21Nov 18, 2023Updated 2 years ago
- ☆17May 30, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A post-mapping authentication toolkit for ancient metagenomics☆24Mar 30, 2026Updated 6 months ago
- Damage parameter estimation for ancient DNA☆19Aug 26, 2026Updated 2 months ago
- gargammel is an ancient DNA simulator☆39Sep 25, 2026Updated last month
- ☆19Jun 26, 2025Updated last year
- A merged read deduplication tool capable to perform merged read deduplication on single end data.☆14Sep 4, 2024Updated 2 years ago
- Code repository for the HAYSTAC pipeline☆18Oct 25, 2024Updated 2 years ago
- Strain level microbiome wide association studies☆14Oct 14, 2026Updated 2 weeks ago
- A workflow for integrating ancient lineages into present-day phylogenies.☆32Jul 24, 2026Updated 3 months ago
- ONEcode package to replace SAM/BAM, especially for eDNA mapping to everything☆20Aug 17, 2026Updated 2 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- This book summarises prepared mini-courses for various computational tools and methods in the field of human archaeogenetic data analysis…☆17Oct 14, 2026Updated 2 weeks ago
- Maximum a posteriori estimate of contamination for ancient samples☆26Sep 28, 2026Updated last month
- Analyzing Mapping Biases and Evaluating Read Reliability☆11Apr 6, 2026Updated 6 months ago
- Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights☆17Nov 24, 2025Updated 11 months ago
- ☆24Jun 9, 2021Updated 5 years ago
- A toolkit for exploring regions of variation in pangenomes☆15Jun 12, 2026Updated 4 months ago
- ☆13Oct 19, 2023Updated 3 years ago
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12May 22, 2024Updated 2 years ago
- ArcheoFOSS 2022: the official repository for the review of panel and paper proposals☆16Sep 23, 2022Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Rapid & standardized genome annotation using protein structural information☆81Oct 14, 2026Updated 2 weeks ago
- MUSET. Set of utilities for the construction of abundance unitig matrices from sequencing data☆11Jun 1, 2026Updated 4 months ago
- ☆18Dec 3, 2024Updated last year
- metaDMG-cpp☆19Oct 19, 2026Updated last week
- ☆16Feb 11, 2022Updated 4 years ago
- "Archaeogenetics analysis of Anatolia"☆14Jan 27, 2021Updated 5 years ago
- Calculate confidence scores from Kraken2 output☆25Feb 18, 2024Updated 2 years ago