SPAAM-community / AncientMetagenomeDir
Repository containing lists of all published ancient metagenomic (and related) samples and libraries
☆72Updated this week
Alternatives and similar repositories for AncientMetagenomeDir:
Users that are interested in AncientMetagenomeDir are comparing it to the libraries listed below
- Using ggtree to build phylogenetic trees☆46Updated 4 months ago
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆64Updated last year
- A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category☆62Updated 6 months ago
- A tool for agile functional analysis of shotgun metagenomic data☆24Updated 6 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆58Updated last month
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆69Updated 9 months ago
- BEAV: Bacterial Element Annotation reVamped☆63Updated 5 months ago
- phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.☆83Updated last year
- Metagenomic Analysis in Real Time☆23Updated last week
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆71Updated 2 years ago
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆55Updated 6 months ago
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆88Updated 7 months ago
- Perl script for simulating PCR reactions. Extract sequences from a query based on primer sequences.☆41Updated 4 years ago
- Reorients assembled microbial sequences☆115Updated this week
- ☆29Updated 10 months ago
- Parse NCBI taxonomy and accessions to find taxonomic assignments☆74Updated 2 weeks ago
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆38Updated last year
- ☆50Updated 11 months ago
- IS mapping software☆53Updated 3 years ago
- A robust and fast clustering method for amplicon-based studies☆31Updated 2 years ago
- post processing of bacterial pangenome gene presence/absence matrices☆59Updated last month
- Amplicon sequence processing workflow using QIIME 2 and Snakemake☆45Updated last month
- ☆68Updated 3 weeks ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆58Updated last year
- An R package designed for drawing gene arrow maps☆73Updated last week
- Bioinformatics Tools☆86Updated 3 weeks ago
- Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2☆29Updated 5 years ago
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆55Updated 3 weeks ago
- AMR++ is a bioinformatic pipeline meant to aid in the analysis of raw sequencing reads to characterize the profile of antimicrobial resis…☆35Updated last week
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated 2 years ago