Repository containing lists of all published ancient metagenomic (and related) samples and libraries
☆85Jul 20, 2026Updated last month
Alternatives and similar repositories for AncientMetagenomeDir
Users that are interested in AncientMetagenomeDir are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Additional supplementary information and code, data repository for Fellows Yates, J.A. et al. (2021) PNAS. DOI: http://dx.doi.org/10.1073…☆13Oct 20, 2021Updated 4 years ago
- ☆15Mar 13, 2026Updated 5 months ago
- A fully reproducible and state-of-the-art ancient DNA analysis pipeline☆213Aug 7, 2026Updated 3 weeks ago
- Ancient microbiome snakemake workflow☆32Jun 12, 2026Updated 2 months ago
- Coprolite host Identification pipeline☆14Jul 28, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Introduction to Ancient Metagenomics Book☆16Updated this week
- mapping pipeline for ancient DNA☆35Updated this week
- ☆15May 30, 2024Updated 2 years ago
- A post-mapping authentication toolkit for ancient metagenomics☆22Mar 30, 2026Updated 4 months ago
- A Java based tool to determine damage patterns on ancient DNA as a replacement for mapDamage☆22Nov 18, 2023Updated 2 years ago
- ☆21Dec 15, 2023Updated 2 years ago
- This book summarises prepared mini-courses for various computational tools and methods in the field of human archaeogenetic data analysis…☆17Jul 17, 2026Updated last month
- Damage parameter estimation for ancient DNA☆19Updated this week
- ☆18Nov 19, 2021Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A repo with just adapter sequences☆14Jul 7, 2025Updated last year
- "Archaeogenetics analysis of Anatolia"☆14Jan 27, 2021Updated 5 years ago
- ☆16Feb 11, 2022Updated 4 years ago
- gargammel is an ancient DNA simulator☆39Aug 18, 2026Updated last week
- A pipeline for the analysis of sedimentary ancient mtDNA.☆18Updated this week
- ☆12Mar 11, 2022Updated 4 years ago
- Maximum a posteriori estimate of contamination for ancient samples☆25Aug 6, 2026Updated 3 weeks ago
- a pipeline to cluster proteins into families☆10Apr 1, 2020Updated 6 years ago
- Software for ancestry estimation in unrelated individuals☆25Jan 31, 2026Updated 6 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ONEcode package to replace SAM/BAM, especially for eDNA mapping to everything☆19Aug 17, 2026Updated last week
- A workflow for integrating ancient lineages into present-day phylogenies.☆32Jul 24, 2026Updated last month
- multiGenomicContext is a pipeline to see your protein in many genomic context as much as gbk you have.☆11Oct 10, 2022Updated 3 years ago
- A Hierarchical Approach to Pangenomics Inference☆13Apr 15, 2024Updated 2 years ago
- ☆24Jun 9, 2021Updated 5 years ago
- The Poseidon Community Archive (PCA). Download from here: https://server.poseidon-adna.org/explorer/community-archive NOT through the G…☆18Aug 14, 2026Updated 2 weeks ago
- PSMC-based Migration and Split Time Inference (MiSTI) from two genomes☆12Mar 20, 2026Updated 5 months ago
- A repository for the organisation of a Special Interest Group at CAA on R, python, and friends☆27Jun 11, 2026Updated 2 months ago
- Population genetic simulations in R☆64Jul 3, 2026Updated last month
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- mapDamage: tracking and quantifying damage patterns in ancient DNA sequences☆51Jul 14, 2025Updated last year
- Calculate confidence scores from Kraken2 output☆25Feb 18, 2024Updated 2 years ago
- ☆10Dec 8, 2021Updated 4 years ago
- ☆53May 12, 2026Updated 3 months ago
- A comprehensive prokaryotic genome annotation pipeline☆91Aug 18, 2026Updated last week
- A fast and accurate binning refinement tool to constructs high quality MAGs from the output of multiple binning tools.☆55Jul 10, 2026Updated last month
- 16S taxonomy assignment using an ecosystem-specific database.☆17Feb 13, 2023Updated 3 years ago