daler / trackhubLinks
create, manage, and upload track hubs for use in the UCSC genome browser
☆54Updated last year
Alternatives and similar repositories for trackhub
Users that are interested in trackhub are comparing it to the libraries listed below
Sorting:
- Run Picard on BAM files and collate 90 metrics into one file.☆40Updated 8 years ago
- Fluff is a Python package that contains several scripts to produce pretty, publication-quality figures for next-generation sequencing exp…☆71Updated last year
- R package for genomic feature analysis and visualization☆79Updated 7 months ago
- R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing☆61Updated 6 months ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Updated 4 years ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆54Updated 3 weeks ago
- GREAT Analysis - Functional Enrichment on Genomic Regions☆93Updated 2 weeks ago
- An R interface to the MEME Suite☆53Updated 5 months ago
- A small R package to make sequencing read coverage plots in R.☆39Updated 2 weeks ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆36Updated 3 years ago
- combining p-values using modified stouffer-liptak for spatially correlated results (probes)☆46Updated 3 years ago
- Sashimi plots for RNA-seq data using detected transcripts☆29Updated 8 months ago
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Updated 7 years ago
- A tool for bigWig files.☆118Updated 7 years ago
- Exon-exon splice junctions across SRA☆42Updated 4 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- Genomic data interpretation and visualization Workshop☆21Updated 2 months ago
- Transcript quantification import for modular pipelines☆142Updated last month
- Detecting intron retention from RNA-Seq experiments☆55Updated last year
- Differential ATAC-seq toolkit☆27Updated last year
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆41Updated last year
- gemBS is a bioinformatics pipeline designed for high throughput analysis of DNA methylation from Whole Genome Bisulfite Sequencing data (…☆33Updated 3 years ago
- Transcript quantification import with automatic metadata detection☆67Updated last week
- Quality of RNA-Seq Toolset☆53Updated 6 years ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆60Updated 5 years ago
- Scripts to import your FeatureCounts output into DEXSeq☆34Updated 7 years ago
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago