create, manage, and upload track hubs for use in the UCSC genome browser
☆55Apr 20, 2024Updated last year
Alternatives and similar repositories for trackhub
Users that are interested in trackhub are comparing it to the libraries listed below
Sorting:
- Manage the visualization of large amounts of other people's [often messy] genomics data☆18Apr 10, 2016Updated 9 years ago
- Blacktie: a streamlined interface to the popular tophat/cufflinks RNA-seq pipeline☆26Oct 5, 2015Updated 10 years ago
- ☆12Apr 9, 2018Updated 7 years ago
- Analyze antibody repertoires and discover new V genes from high-throughput sequencing reads☆16Dec 5, 2023Updated 2 years ago
- nucleosome calling using ATAC-seq☆110Dec 20, 2020Updated 5 years ago
- RNF framework for NGS: simulation of reads, evaluation of mappers, conversion of RNF-compliant data.☆14Nov 10, 2025Updated 3 months ago
- LIONS is a bioinformatic analysis pipeline which brings together a few pieces of software and some home-brewed scripts to annotate a p…☆30Dec 28, 2020Updated 5 years ago
- JSON-based FON (Feature Object Notation) format and tools to simplify genomic annotations usage☆13Jun 11, 2025Updated 8 months ago
- Isoform co-usage networks from single-cell RNA-seq data☆16Feb 21, 2024Updated 2 years ago
- nim wrapper for htslib for parsing genomics data files☆157Dec 15, 2025Updated 2 months ago
- Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …☆25Dec 11, 2017Updated 8 years ago
- User-friendly Bioinformatics Tools☆18Mar 5, 2021Updated 5 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37May 18, 2022Updated 3 years ago
- SQL-like query language for the SAM/BAM file format☆29Sep 20, 2023Updated 2 years ago
- Pipeline for analyzing rare mutations in metagenome-assembled genomes☆10Apr 4, 2025Updated 11 months ago
- Variational Auto Encoders for learning binding signatures of transcription factors☆14Mar 14, 2024Updated last year
- Fully automated generation of UCSC assembly hubs☆35Oct 2, 2024Updated last year
- Chromatin segmentation in R☆19Feb 4, 2018Updated 8 years ago
- Robust, tested workflows for RNA-seq, ChIP-seq and other high-throughput sequencing analysis☆23Jan 31, 2026Updated last month
- Methods for summarizing and visualizing multi-biosample functional genomic annotations☆47Mar 26, 2025Updated 11 months ago
- IsoTools is a python module for Long Read Transcriptome Sequencing (LRTS) analysis.☆27Oct 6, 2023Updated 2 years ago
- A tool for Read Multi-Mapper Resolution☆24Feb 15, 2017Updated 9 years ago
- Genetics training camp☆21Sep 8, 2020Updated 5 years ago
- Fluff is a Python package that contains several scripts to produce pretty, publication-quality figures for next-generation sequencing exp…☆71Apr 12, 2024Updated last year
- VIPER (Variant InsPector and Expert Rating tool) can be utilised to view variant calls and decide whether or not those are true or false …☆16Jan 17, 2022Updated 4 years ago
- A comprehensive analysis tool for Ribo-seq and small RNA-seq data☆10Jun 22, 2020Updated 5 years ago
- Scripts for identifying sites with differential error rates in mapped nanopore DRS data☆11Nov 27, 2020Updated 5 years ago
- xGAP is an efficient, modular, extensible and fault-tolerant pipeline for massively parallelized genomic analysis/variant discovery from …☆11Oct 21, 2020Updated 5 years ago
- Simple pipeline to go from an alignment to a neutral model, using the PHAST toolkit☆11Jan 17, 2020Updated 6 years ago
- Novel Adjacency Identification with Barcoded Reads☆13Apr 19, 2022Updated 3 years ago
- amplicon/smMIP mapping and analysis pipeline☆11Dec 8, 2022Updated 3 years ago
- Fast Structural Variation Detection Toolbox☆19Feb 16, 2015Updated 11 years ago
- ☆10Mar 11, 2025Updated 11 months ago
- Visualize genomic data using webgl and webworkers, in an effort to provide a fluid, high-performance user experience.☆11May 24, 2024Updated last year
- reorganize paper of deconvolution method☆11Dec 14, 2023Updated 2 years ago
- The code for Daugherty, et al 2017 - Chromatin accessibility dynamics reveal novel functional enhancers in C. elegans☆11Aug 24, 2017Updated 8 years ago
- python access to UCSC genomes database☆136Aug 27, 2020Updated 5 years ago
- We have moved to https://github.com/limix/limix.☆23Aug 29, 2017Updated 8 years ago
- ☆22Oct 6, 2023Updated 2 years ago