Alternatives and similar repositories for DeepBE

Users that are interested in DeepBE are comparing it to the libraries listed below

• Illumina / PromoterAI
  ☆88Updated 2 months ago
• gagneurlab / SpeciesLM
  Species-aware DNA language models capture regulatory elements and their evolution
  ☆27Updated 2 years ago
• Illumina / PrimateAI-3D
  ☆72Updated 2 months ago
• jzhoulab / puffin
  deep learning-inspired explainable sequence model for transcription initiation
  ☆100Updated 11 months ago
• WrightLabScience / EvoWeaver-ExampleCode
  Associated code for EvoWeaver publication
  ☆16Updated 8 months ago
• CraigIDent / SpliSER
  Bioinformatic tool for Splice site Strength Estimation using RNA-seq
  ☆20Updated 6 months ago
• julianeweller / MinsePIE
  Modelling insertion efficiency for Prime Insertion Experiments
  ☆13Updated last year
• vagarwal87 / Xpresso
  Predicting gene expression levels from genomic sequences
  ☆54Updated 5 years ago
• bernardo-de-almeida / DeepSTARR
  Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…
  ☆72Updated 2 years ago
• xryanglab / RiboMiner
  a toolset for mining multi-dimensional features of the translatome with ribosome profiling data
  ☆18Updated 6 months ago
• de-Boer-Lab / random-promoter-dream-challenge-2022
  ☆34Updated last year
• tanjimin / C.Origami
  C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.
  ☆82Updated last year
• santiago1234 / iCodon
  iCodon customizes gene expression based on the codon composition
  ☆15Updated 2 years ago
• zhaoweiyu-github / ChromBERT
  ChromBERT: A pre-trained foundation model for context-specific transcription regulatory network
  ☆18Updated last month
• lingxusb / megaDNA
  ☆74Updated last year
• MonashBioinformaticsPlatform / polyApipe
  polyApipe
  ☆19Updated last year
• pinellolab / CRISPRitz
  Tool package to perform in-silico CRISPR analysis and assessment
  ☆34Updated 2 months ago
• GfellerLab / MixMHC2pred
  HLA-II ligand predictor.
  ☆46Updated 2 years ago
• zhangtaolab / Plant_DNA_LLMs
  PDLLMs: A group of tailored DNA large language models (LLMs) for analyzing plant genomes
  ☆47Updated 8 months ago
• menghaowei / Detect-seq
  An unbiased method for genome-wide CBE off-targets assessment
  ☆13Updated 2 years ago
• tsailabSJ / changeseq
  CHANGE-seq analysis pipeline
  ☆11Updated last month
• CRISPRJWCHOI / CRISPR_toolkit
  CRISPR Indel, base edit analysis
  ☆11Updated 5 years ago
• chaolinzhanglab / DeltaSplice
  A neural network model to predict splice site usage and splicing-altering mutations
  ☆15Updated 6 months ago
• pinellolab / PrimeDesign
  Software tool for the flexible design of pegRNAs and ngRNAs for prime editing!
  ☆26Updated 3 years ago
• cyang235 / LncADeep
  LncADeep is an ab initio lncRNA identification and functional annotation tool based on deep learning
  ☆29Updated 7 years ago
• feldman4 / dna-barcodes
  Generate robust DNA barcode sets
  ☆33Updated 2 years ago
• gladstone-institutes / Interactive-Enrichment-Analysis
  A set of Shiny apps to provide interactive enrichment analysis and exploration of results.
  ☆31Updated 3 weeks ago
• ketringjoni / SuPreMo
  Pipeline for generating reference and perturbed sequences for input into predictive models.
  ☆11Updated last year
• castillohair / paper-5utr-design
  Code for "Optimizing 5’UTRs for mRNA-delivered gene editing using deep learning"
  ☆24Updated last year
• ShenLab-Genomics / SpliceTransformer
  SpliceTransformer(SpTransformer) is a deep learning tool to predict tissue specific splicing site from pre-mRNA sequence
  ☆31Updated last year