Magdoll / AAVLinks
Scripts for analyzing PacBio AAV sequences
☆15Updated last year
Alternatives and similar repositories for AAV
Users that are interested in AAV are comparing it to the libraries listed below
Sorting:
- SV detection tool for nanopore sequence reads☆97Updated last month
- seqfu - Sequece Fastx Utilities☆126Updated last week
- WDL’s and Dockerfiles for assembly QC process☆72Updated 6 months ago
- 🏔 coverage extraction from BAM/CRAM files, supporting targets 📊☆65Updated last week
- Tool package to perform in-silico CRISPR analysis and assessment☆34Updated 2 months ago
- Variant calling tool for long-read sequencing data☆117Updated 10 months ago
- Sequences from HIV Easily Reconstructed☆28Updated last year
- Efficiently read and write sequencing data from Python☆69Updated 3 months ago
- Specifications for PacBio® native file formats☆31Updated last year
- ClairS - a deep-learning method for long-read somatic small variant calling☆103Updated 2 weeks ago
- A python package and a set of shell commands to handle GTF files☆50Updated 3 weeks ago
- cDNA read preprocessing☆84Updated last year
- ☆39Updated last month
- Toolkit for calling structural variants using short or long reads☆115Updated last week
- ☆126Updated 2 years ago
- Protein hint generation pipeline for gene finding in eukaryotic genomes☆60Updated 2 years ago
- profile basd Illumina pair-end Reads Simulator☆28Updated 2 years ago
- new repo☆28Updated 4 years ago
- CoGe (Comparative Genomics) Platform☆46Updated 4 years ago
- Tandem repeat expansion detection or genotyping from long-read alignments☆141Updated 2 months ago
- ☆52Updated 4 months ago
- ☆73Updated 2 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆68Updated 9 months ago
- MIP based joint inference of copy number and rearrangement state in cancer whole genome sequence data.☆59Updated 10 months ago
- Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads☆82Updated 3 weeks ago
- Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.☆52Updated 2 months ago
- TIDDIT - structural variant calling☆78Updated 2 months ago
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆69Updated 2 months ago
- Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing☆42Updated last year
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆58Updated last year