epi2me-labs / wf-clone-validation
☆24Updated this week
Related projects: ⓘ
- Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, et…☆83Updated last week
- A versatile toolkit for k-mers with taxonomic information☆74Updated last month
- ☆30Updated 4 months ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆42Updated 4 years ago
- Detection of incorrectly labeled sequences across kingdoms☆77Updated last year
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Updated 3 years ago
- List of genome assembly tools☆44Updated 2 weeks ago
- SHOOT.bio - the phylogenetic search engine☆24Updated last year
- Protein hint generation pipeline for gene finding in eukaryotic genomes☆55Updated 10 months ago
- ☆56Updated 2 months ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated last year
- A python tool box for fast and accurate quality control, conversion and alignment of nanopore sequencing data☆20Updated 2 years ago
- ☆32Updated this week
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆34Updated 9 months ago
- ARTIC SARS-CoV-2 workflow and reporting☆47Updated this week
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆60Updated 11 months ago
- The NanoPipe pipeline analyzes reads generated by the Oxford Nanopore sequencing devices. As a result, it provides alignments to any targ…☆18Updated 5 years ago
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆29Updated 2 weeks ago
- Visualize whole genome alignments as linear maps☆69Updated last year
- perSVade: personalized Structural Variation detection☆36Updated 3 months ago
- Simple bacterial assembly and annotation pipeline☆60Updated this week
- ☆23Updated this week
- a collection of scripts for organising bacterial genomes by species☆75Updated 2 years ago
- hecatomb is a virome analysis pipeline for analysis of Illumina sequence data☆54Updated 3 months ago
- A pipeline for high-quality bacterial genome construction using ONT sequencing☆38Updated last year
- Protein Alignment and Detection Interface☆60Updated 5 months ago
- genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.☆46Updated 5 months ago
- Microbiome classification pipeline☆63Updated 5 months ago
- This repository hosts a large collection of Nextflow snippets☆56Updated 3 months ago
- Scalable creating/updating of metagenome profiling databases☆57Updated last year