pinellolab / CRISPRitzLinks
Tool package to perform in-silico CRISPR analysis and assessment
☆29Updated last year
Alternatives and similar repositories for CRISPRitz
Users that are interested in CRISPRitz are comparing it to the libraries listed below
Sorting:
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated last year
- ✂️ Deep learning-based splice site predictor that improves spliced alignments☆53Updated 5 months ago
- gatk4 RNA variant calling pipeline☆51Updated 3 weeks ago
- Ultra-fast 5' and 3' demultiplexer☆27Updated last year
- visual analysis of your VCF files☆36Updated 2 years ago
- Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing☆40Updated last year
- Merging paired-end reads and removing adapters☆45Updated 4 months ago
- ☆39Updated last month
- A python tool box for fast and accurate quality control, conversion and alignment of nanopore sequencing data☆20Updated 3 years ago
- for visual evaluation of read support for structural variation☆54Updated last year
- The Zavolab Automated RNA-seq Pipeline☆35Updated 2 weeks ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 9 months ago
- Haplotype, isoform and gene level expression analysis using multi-mapping RNA-seq reads☆68Updated last year
- A Computational Workflow for Designing Libraries of sgRNAs for CRISPR-Mediated Base Editing, and much more☆19Updated last year
- Master of Pores 2☆23Updated 8 months ago
- Long-read Isoform Quantification and Analysis☆38Updated 4 months ago
- Interactive multiscale visualization for structural variation in human genomes☆70Updated this week
- Digenome-toolkit ver2.☆16Updated 3 years ago
- POSTRE: Prediction Of STRuctural variant Effects☆27Updated 5 months ago
- Genome Contact Map Explorer - gcMapExplorer. Visit:☆21Updated 3 years ago
- A library for counting small kmer frequencies in nucleotide sequences.☆28Updated 9 months ago
- new repo☆28Updated 4 years ago
- Flash2 has some improvements from flash_1 including new logic from innie and outie overlaps as well as some initial steps for flash for a…☆50Updated 7 years ago
- Generate robust DNA barcode sets☆31Updated last year
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆93Updated 2 months ago
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆28Updated 4 years ago
- Useful tools for working with Salmon output☆38Updated 5 years ago
- A tool for projecting genomic alignments to transcriptomic coordinates☆36Updated last year
- Long read to rMATS☆32Updated 2 years ago
- ☆80Updated this week