Co-expression network management based on WGCNA + k-means
☆22May 11, 2021Updated 5 years ago
Alternatives and similar repositories for CoExpNets
Users that are interested in CoExpNets are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Optimization process of WGCNA hierarchical clustering with k-means☆16Mar 14, 2019Updated 7 years ago
- Efficiently compute robust markers across single-cell datasets☆13Apr 21, 2021Updated 5 years ago
- CWGCNA is an R package to perform causal inference from the WGCNA framework.☆20Oct 26, 2024Updated 2 years ago
- Code for reproducing results in the paper "Topological gene-expression networks recapitulate brain anatomy and function"☆12Mar 11, 2019Updated 7 years ago
- ☆11Apr 28, 2025Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Code and results from TotalSeqC antibody titration and pipeline benchmarking for CITE-seq experiments☆10Mar 13, 2021Updated 5 years ago
- Pairwise Hierarchical Model☆21Mar 11, 2022Updated 4 years ago
- Immune evasion before tumor invasion in early squamous lung cell carcinogenesis☆17Jul 19, 2021Updated 5 years ago
- GEO RNA-seq Experiments Processing Pipeline☆23Oct 25, 2019Updated 7 years ago
- NOTE: This package has been renamed to sparrow and will be submitted to Bioconductor 3.14. Please use that package instead. This is kept …☆23Nov 16, 2020Updated 5 years ago
- ClusterMap is an R package to analyze and compare two or more single cell expression datasets.☆22Jan 17, 2023Updated 3 years ago
- Pretty, simple, optionally interactive plots for bioinformatics analysis pipelines☆14Mar 1, 2023Updated 3 years ago
- Tunable Approach for Median Polish of Ratio -- Biological Abundance Batch Effect Removal☆37May 27, 2025Updated last year
- Helper Functions for LIBD Deconvolution☆11Sep 25, 2026Updated last month
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Detecting Aberrant Splicing Events from RNA-sequencing data☆17Dec 10, 2024Updated last year
- clustering method for single-cell transcriptomics data☆11Oct 11, 2026Updated 2 weeks ago
- K-means clustering for large single-cell datasets☆13Feb 10, 2026Updated 8 months ago
- Inferring gene co-expression networks from single cell gene expression data☆29Aug 5, 2022Updated 4 years ago
- ☆10Mar 12, 2023Updated 3 years ago
- Spatial Omics Structure Analysis (sosta)☆10Sep 18, 2026Updated last month
- Gene expression in neuroexpresso database☆18Oct 25, 2024Updated 2 years ago
- Indigo: SNV and InDel Discovery in Chromatogram traces obtained from Sanger sequencing of PCR products☆37Oct 19, 2026Updated last week
- Statistics: Data analysis and modelling☆17Sep 22, 2025Updated last year
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- An R package for Standardized Summary, Annotation, Comparison, and Visualization of CNV, CNVR and ROH☆16Oct 17, 2021Updated 5 years ago
- An R package that integrates the installation, execution, and benchmark of cutting-edge computational doublet-detection methods.☆12Dec 4, 2022Updated 3 years ago
- Marker gene profile estimation method used in NeuroExpresso manuscript☆14Jul 11, 2019Updated 7 years ago
- NAnostring quality Control dasHbOard.☆11Updated this week
- Classification of Single cells by Transfer Learning☆12Oct 11, 2025Updated last year
- represent each cell in UMAP plots as a pie chart☆16Sep 27, 2021Updated 5 years ago
- EditR: an algorithm for simple and cost effective measurement of base editing by quantifying Sanger trace fluorescence☆33Sep 1, 2023Updated 3 years ago
- R package for CS-CORE, a statistical method for cell-type-specific co-expression inference from single cell RNA-sequencing data☆31May 4, 2026Updated 5 months ago
- Perform differential expression analysis on cohort-scale single cell datasets using linear mixed models☆25Sep 23, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- single cell Gene co-Expression Network Analysis☆10Sep 6, 2022Updated 4 years ago
- R package for distinguishing cells from background barcodes in droplet-based single-cell RNA-seq data☆11Apr 19, 2023Updated 3 years ago
- Integrating zingeR with ZINB-WaVE weights☆27Feb 15, 2018Updated 8 years ago
- Trans-association between HLA and TCR-CDR3☆20Mar 29, 2023Updated 3 years ago
- Wrapper R scripts for performing a weighted-gene co-expression network analysis (WGCNA)☆30Jul 26, 2015Updated 11 years ago
- Missing value imputation and evaluation, especially for metabolomics data sets☆20Jun 27, 2018Updated 8 years ago
- Code to reproduce analysis and figures for 'Genetic mapping of etiologic brain cell types for obesity' (Timshel, eLife 2020)☆14May 20, 2021Updated 5 years ago