Co-expression network management based on WGCNA + k-means
☆22May 11, 2021Updated 5 years ago
Alternatives and similar repositories for CoExpNets
Users that are interested in CoExpNets are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Optimization process of WGCNA hierarchical clustering with k-means☆15Mar 14, 2019Updated 7 years ago
- Efficiently compute robust markers across single-cell datasets☆13Apr 21, 2021Updated 5 years ago
- Immune evasion before tumor invasion in early squamous lung cell carcinogenesis☆17Jul 19, 2021Updated 5 years ago
- Tunable Approach for Median Polish of Ratio -- Biological Abundance Batch Effect Removal☆36May 27, 2025Updated last year
- Pretty, simple, optionally interactive plots for bioinformatics analysis pipelines☆14Mar 1, 2023Updated 3 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Code and results from TotalSeqC antibody titration and pipeline benchmarking for CITE-seq experiments☆10Mar 13, 2021Updated 5 years ago
- CWGCNA is an R package to perform causal inference from the WGCNA framework.☆19Oct 26, 2024Updated last year
- Trans-association between HLA and TCR-CDR3☆19Mar 29, 2023Updated 3 years ago
- Missing value imputation and evaluation, especially for metabolomics data sets☆19Jun 27, 2018Updated 8 years ago
- Pairwise Hierarchical Model☆20Mar 11, 2022Updated 4 years ago
- Code to reproduce analysis and figures for 'Genetic mapping of etiologic brain cell types for obesity' (Timshel, eLife 2020)☆14May 20, 2021Updated 5 years ago
- GEO RNA-seq Experiments Processing Pipeline☆22Oct 25, 2019Updated 6 years ago
- represent each cell in UMAP plots as a pie chart☆16Sep 27, 2021Updated 4 years ago
- EditR: an algorithm for simple and cost effective measurement of base editing by quantifying Sanger trace fluorescence☆33Sep 1, 2023Updated 2 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Wrapper R scripts for performing a weighted-gene co-expression network analysis (WGCNA)☆30Jul 26, 2015Updated 10 years ago
- Batch Effect Correction of RNA-seq Data through Sample Distance Matrix Adjustment☆18Jun 3, 2021Updated 5 years ago
- NOTE: This package has been renamed to sparrow and will be submitted to Bioconductor 3.14. Please use that package instead. This is kept …☆23Nov 16, 2020Updated 5 years ago
- Manage Files Across Sessions☆14Apr 29, 2026Updated 2 months ago
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆23Jun 28, 2024Updated 2 years ago
- GSimp is a Gibbs sampler-based missing value imputation approach☆20Sep 13, 2020Updated 5 years ago
- Inference of putative transmission phylogenetic clusters☆12Oct 13, 2020Updated 5 years ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆42Feb 8, 2023Updated 3 years ago
- ☆15May 31, 2020Updated 6 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- WITCH is a multiple sequence alignment method that uses multiple weighted HMMs to align unaligned sequences and find consensuses.☆13Nov 18, 2025Updated 8 months ago
- Hierarchical, iterative clustering for analysis of transcriptomics data in R☆120Aug 20, 2025Updated 11 months ago
- ☆17Sep 13, 2024Updated last year
- FASSO: Functional Annotations using Sequence and Structure Orthology☆10Jan 17, 2023Updated 3 years ago
- Inferring gene co-expression networks from single cell gene expression data☆29Aug 5, 2022Updated 3 years ago
- A toolbox for working with Allen Human Brain Atlas microarray expression data☆14Jul 7, 2026Updated 2 weeks ago
- ☆31Aug 4, 2023Updated 2 years ago
- Suite of command-line software for high-performance graphical analysis of ChIP-seq/RNA-seq/ATAC-seq data☆21May 2, 2022Updated 4 years ago
- Detecting Aberrant Splicing Events from RNA-sequencing data☆17Dec 10, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution☆47May 3, 2023Updated 3 years ago
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Apr 22, 2019Updated 7 years ago
- Analysis on stop reasons☆10Jun 17, 2024Updated 2 years ago
- Schedule and resources from the OHBM Open Science Room: Rome 2019☆16Jun 25, 2019Updated 7 years ago
- Source code for integrative nonnegative matrix factorization☆19Jul 12, 2018Updated 8 years ago
- Phylogenetic pathway–dependent recognition of fixed substitutions and parallel mutations☆11Sep 18, 2025Updated 10 months ago
- Tracebacks for Humans (in Jupyter notebooks)☆12Updated this week