Alternatives and similar repositories for CRISPR-Local

Users that are interested in CRISPR-Local are comparing it to the libraries listed below

• MoriarityLab / EditR
  EditR: an algorithm for simple and cost effective measurement of base editing by quantifying Sanger trace fluorescence
  ☆32Updated last year
• patrickc01 / CRIS.py
  Analyze NGS data for CRISPR (or any engineered endonuclease) activity and screen for clones. Screen for NHEJ or multiple HDR events concu…
  ☆27Updated last year
• indexofire / ndafp
  New version
  ☆33Updated 8 years ago
• Tong-Chen / NGS
  Scripts for next generation sequencing
  ☆48Updated 5 years ago
• PacificBiosciences / barcoding
  Lima - Demultiplex Barcoded PacBio Samples
  ☆67Updated last month
• Sentieon / sentieon-scripts
  Helper scripts for biological data processing from Sentieon
  ☆64Updated 8 months ago
• tseemann / PEAR
  Pair-End AssembeR
  ☆32Updated 11 years ago
• ShiLab-Bioinformatics / subread
  The Subread software package is a tool kit for processing next-gen sequencing data. It includes Subread aligner, Subjunc exon-exon juncti…
  ☆45Updated last year
• jianhong / trackViewer.documentation
  documentation for trackViewer
  ☆29Updated 5 years ago
• Tong-Chen / Bioinfo_course_python
  ☆31Updated 4 years ago
• menghaowei / ngstools
  My own tools code for NGS data analysis (Next Generation Sequencing)
  ☆30Updated 5 years ago
• Tong-Chen / Bioinfo_course_R
  ☆38Updated last year
• OmicsSuite / OmicsSuite.github.io
  OmicsSuite website for releasing new version.
  ☆22Updated last year
• Tong-Chen / s-plot
  A simple plot library
  ☆52Updated 7 years ago
• Weeks-UNC / shapemapper2
  Public repository for ShapeMapper 2 releases
  ☆37Updated 6 months ago
• pinellolab / AmpUMI
  Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)
  ☆41Updated last year
• tao-bioinfo / gff3sort
  GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools
  ☆51Updated 5 years ago
• dieterich-lab / JACUSA2
  New version of JACUSA -> 2.0
  ☆27Updated last month
• gencorefacility / variant-calling-pipeline
  HPC based pipelines for variant calling using GATK
  ☆17Updated 5 years ago
• dmnfarrell / smallrnaseq
  small rna-seq analysis package
  ☆30Updated 2 years ago
• xuzhougeng / R-ChIP-data-analysis
  ☆50Updated 6 years ago
• ISUgenomics / common_scripts
  my bin directory
  ☆45Updated 7 months ago
• salzman-lab / SPLASH
  ☆43Updated 9 months ago
• hyphaltip / genome-scripts
  Genome Scripts used in fungal comparative genomics
  ☆66Updated 4 years ago
• irusri / Extract-intron-from-gff3
  This script will extract the intron feature gff3 and sequence from gene_exon gff3 and fasta file.
  ☆33Updated 6 years ago
• aryeelab / guideseq
  Analysis pipeline for the GUIDE-seq assay.
  ☆78Updated 2 years ago
• BioinfoUNIBA / REDItools
  REDItools are python scripts to investigate RNA editing at genomic scale.
  ☆66Updated 8 months ago
• urmi-21 / orfipy
  Fast and flexible ORF finder
  ☆71Updated 3 years ago
• mritchielab / long_read_tools
  A catalogue of available long read sequencing data analysis tools
  ☆77Updated 3 months ago
• ICBI / viGEN
  viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data
  ☆27Updated 8 months ago