MannLabs / alphabaseLinks
Infrastructure of AlphaX ecosystem
☆44Updated last week
Alternatives and similar repositories for alphabase
Users that are interested in alphabase are comparing it to the libraries listed below
Sorting:
- Imputing proteomics data using deep learning models☆29Updated this week
- Python Package for the downstream analysis of mass-spectrometry-based proteomics data☆74Updated last month
- This is a collection of minimal code to visualize various aspects of proteomics data.☆83Updated 3 years ago
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆86Updated last month
- Fast and accurate label-free quantification for small and very large numbers of proteomes☆60Updated last month
- modular & open DIA search☆75Updated this week
- AlphaViz is a cutting-edge browser-based interactive visualization tool allowing to visualize the processed mass spectrometry data acquir…☆34Updated 5 months ago
- Deep learning framework for proteomics☆132Updated last month
- Deep Learning the T Cell Receptor Binding Specificity of Neoantigen☆86Updated 3 years ago
- Report processing and protein quantification for MS-based proteomics☆48Updated 2 years ago
- Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data☆120Updated 3 weeks ago
- A list of tools on proteomics using deep learning☆106Updated last year
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆57Updated 3 weeks ago
- An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…☆90Updated last month
- ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction☆34Updated 3 years ago
- SCeptre is a python package that extends the functionalities of Scanpy to analyze multiplexed single-cell proteomics data.☆17Updated last year
- Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics☆121Updated 3 months ago
- 🧪 🖥 Transparent exploration of machine learning for biomarker discovery from proteomics and omics data☆37Updated last year
- Modular and user-friendly platform for AI-assisted rescoring of peptide identifications☆62Updated this week
- ☆35Updated 2 months ago
- A collection of available Python tools for Proteomics analysis☆61Updated 6 years ago
- Detailed explanation on how to setup database for NCBI IgBlast executable, and using it in Python☆29Updated 3 years ago
- 📝 [Paper] TCRen: predicting TCR-peptide recognition based on residue-level pairwise statistical potential☆21Updated last week
- Rescoring and spectral library generation pipeline for proteomics.☆49Updated last week
- Generic TCR-epitope recognition prediction using CNN approach on both known and novel epitopes☆17Updated 2 years ago
- NetTCR-2.0. Sequence-based prediction of peptide-TCR binding☆35Updated 3 years ago
- Community-curated tutorials and datasets for ML in proteomics☆55Updated last month
- An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics☆31Updated 7 months ago
- DART-ID: retention time alignment and peptide identification confidence updates☆17Updated 6 months ago
- Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)☆86Updated 4 years ago