Alternatives and similar repositories for alphabase:

Users that are interested in alphabase are comparing it to the libraries listed below

• MannLabs / ProteomicsVisualization
  This is a collection of minimal code to visualize various aspects of proteomics data.
  ☆71Updated 3 years ago
• MannLabs / alphapeptstats
  Python Package for the downstream analysis of mass-spectrometry-based proteomics data
  ☆64Updated 3 weeks ago
• MannLabs / directlfq
  Fast and accurate label-free quantification for small and very large numbers of proteomes
  ☆44Updated this week
• MannLabs / alphamap
  An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.
  ☆79Updated this week
• MannLabs / alphadia
  modular & open DIA search
  ☆60Updated this week
• MannLabs / alphapeptdeep
  Deep learning framework for proteomics
  ☆116Updated this week
• MannLabs / alphaviz
  AlphaViz is a cutting-edge browser-based interactive visualization tool allowing to visualize the processed mass spectrometry data acquir…
  ☆31Updated this week
• RasmussenLab / pimms
  Imputing proteomics data using deep learning models
  ☆21Updated this week
• vdemichev / diann-rpackage
  Report processing and protein quantification for MS-based proteomics
  ☆38Updated last year
• bzhanglab / deep_learning_in_proteomics
  A list of tools on proteomics using deep learning
  ☆91Updated 9 months ago
• Nesvilab / MSFragger
  Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics
  ☆112Updated 8 months ago
• ftwkoopmans / msdap
  MS-DAP: downstream analysis pipeline for quantitative proteomics
  ☆32Updated 4 months ago
• pwilmart / TMT_analysis_examples
  Examples of TMT data analyses using R. Links to notebooks and repositories. Also a few spectral counting analyses.
  ☆21Updated 2 years ago
• compomics / DeepLC
  DeepLC: Retention time prediction for (modified) peptides using Deep Learning.
  ☆58Updated 2 weeks ago
• wilhelm-lab / oktoberfest
  Rescoring and spectral library generation pipeline for proteomics.
  ☆37Updated 2 weeks ago
• pFindStudio / pDeep3
  MS/MS prediction for peptides
  ☆22Updated 4 years ago
• SlavovLab / DART-ID
  DART-ID: retention time alignment and peptide identification confidence updates
  ☆15Updated last year
• Proteobench / ProteoBench
  ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…
  ☆43Updated this week
• tvpham / iq
  An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics
  ☆24Updated 2 months ago
• ProteomicsML / ProteomicsML
  Community-curated tutorials and datasets for ML in proteomics
  ☆49Updated 2 months ago
• wilhelm-lab / koina
  Democratizing ML in proteomics
  ☆34Updated last week
• MannLabs / structuremap
  Python package for investigating the structural context of PTMs
  ☆28Updated last month
• MannLabs / alphatims
  An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…
  ☆84Updated 2 months ago
• diogobor / Scout
  MS-cleavable search engine that enables interactomic analysis by identifying tandem mass spectra of cross-linked peptides.
  ☆19Updated 3 months ago
• gtluu / timsconvert
  ☆35Updated 3 weeks ago
• Roestlab / PythonProteomics
  A collection of available Python tools for Proteomics analysis
  ☆52Updated 5 years ago
• UWPR / Comet
  An tandem mass spectrometry (MS/MS) sequence database search tool.
  ☆47Updated this week
• PayneLab / ProteomicsEducation
  ☆28Updated 6 months ago
• HaoGroup-ProtContLib / Protein-Contaminant-Libraries-for-DDA-and-DIA-Proteomics
  This project is created by the Hao Lab at the Chemistry Department in George Washington University, Washington, D.C. This project aims to…
  ☆23Updated 2 months ago
• MannLabs / OmicLearn
  🧪 🖥 Transparent exploration of machine learning for biomarker discovery from proteomics and omics data
  ☆33Updated 8 months ago