Imputing proteomics data using deep learning models
☆35Jul 8, 2026Updated 3 months ago
Alternatives and similar repositories for pimms
Users that are interested in pimms are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Proteomics Toolset for Integrative Data Analysis☆27Oct 7, 2025Updated last year
- EuBIC 2023 developer's meeting☆13Jan 16, 2023Updated 3 years ago
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆58Updated this week
- Repository for the Broad Institute Proteogenomic Data Analysis Center (PGDAC) established by the NIH Clinical Proteomics Tumor Analysis C…☆39Oct 1, 2026Updated last week
- Community-curated tutorials and datasets for ML in proteomics☆61Oct 31, 2025Updated 11 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Initial recommendations for performing, benchmarking, and reporting single-cell proteomics experiments. The code is distributed under an …☆12Apr 5, 2023Updated 3 years ago
- AlphaViz is a cutting-edge browser-based interactive visualization tool allowing to visualize the processed mass spectrometry data acquir…☆40Jun 3, 2026Updated 4 months ago
- Analysis platform for large-scale dose-dependent data☆34Nov 25, 2025Updated 10 months ago
- modular & open DIA search☆115Updated this week
- Functional Associations using Variational Autoencoders☆43Updated this week
- The Interactive Peptide Spectral Annotator☆22Jun 9, 2020Updated 6 years ago
- Infrastructure of AlphaX ecosystem☆59Sep 17, 2026Updated 3 weeks ago
- An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics☆34Mar 21, 2026Updated 6 months ago
- DIA-NN - a universal automated software suite for DIA proteomics data analysis.☆482Sep 16, 2026Updated 3 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- The Kinase Library: a Global Atlas of the Human Protein Kinome☆23Sep 3, 2026Updated last month
- Proteomics search & quantification so fast that it feels like magic☆312Updated this week
- ☆17Oct 3, 2023Updated 3 years ago
- A bizarre programming language☆10Jun 24, 2020Updated 6 years ago
- ProXL Web App -- Visualize and Share Protein Cross-linking Data☆13Sep 11, 2026Updated 3 weeks ago
- This is a collection of minimal code to visualize various aspects of proteomics data.☆87Jan 6, 2022Updated 4 years ago
- A comprehensive R package for label-free proteomics data analysis and modeling☆16May 7, 2026Updated 5 months ago
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆50Jul 13, 2026Updated 2 months ago
- An open-source Python package for accurate and sensitive peptide and protein quantification.☆21Oct 1, 2026Updated last week
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- NAguideR: performing and prioritizing missing value imputations for consistent bottom-up proteomic analyses☆52Aug 12, 2025Updated last year
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆113Sep 28, 2026Updated last week
- A label free quantification tool.☆20Jan 13, 2026Updated 8 months ago
- ☆16Jul 18, 2022Updated 4 years ago
- Load bioinformatics datasets into a local database☆11Apr 8, 2025Updated last year
- High quality in silico spectral library generation for data-independent acquisition proteomics☆25Sep 24, 2026Updated 2 weeks ago
- A modular, python-based framework for mass spectrometry. Powered by nbdev.☆192Apr 19, 2024Updated 2 years ago
- Spatial omics analysis toolbox☆20Sep 29, 2026Updated last week
- ☆32May 24, 2022Updated 4 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Single cell proteomics data processing☆33Oct 2, 2026Updated last week
- ☆17Jul 2, 2026Updated 3 months ago
- SCeptre is a python package that extends the functionalities of Scanpy to analyze multiplexed single-cell proteomics data.☆18Mar 18, 2024Updated 2 years ago
- ☆11Jun 25, 2024Updated 2 years ago
- MSConnect is a Web-based integrated plateform to combine data storage/backup, process and visualization of MS-based Proteomics data.☆20Aug 19, 2025Updated last year
- Documentation for the limpa Bioconductor package, which implements quantification and differential analysis of mass-spectrometry proteomi…☆24Sep 7, 2026Updated last month
- ☆72Aug 27, 2026Updated last month