RasmussenLab / pimmsLinks
Imputing proteomics data using deep learning models
☆31Updated 2 months ago
Alternatives and similar repositories for pimms
Users that are interested in pimms are comparing it to the libraries listed below
Sorting:
- This is a collection of minimal code to visualize various aspects of proteomics data.☆82Updated 4 years ago
- Report processing and protein quantification for MS-based proteomics☆52Updated 2 years ago
- Infrastructure of AlphaX ecosystem☆52Updated this week
- MS-DAP: downstream analysis pipeline for quantitative proteomics☆40Updated 10 months ago
- R package - MSstats☆88Updated last week
- Fast and accurate label-free quantification for small and very large numbers of proteomes☆60Updated last week
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆64Updated last week
- Differential Expression Analysis tool box R lang package for omics data☆47Updated 3 weeks ago
- Mass spectrometry imaging toolbox☆67Updated 2 months ago
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆92Updated 2 months ago
- An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics☆32Updated 3 months ago
- PDV: an integrative proteomics data viewer☆59Updated 6 months ago
- Repository for the Broad Institute Proteogenomic Data Analysis Center (PGDAC) established by the NIH Clinical Proteomics Tumor Analysis C…☆37Updated last month
- modular & open DIA search☆97Updated this week
- Analysis of co-fractionation MS datasets☆13Updated 4 years ago
- Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics☆125Updated 3 weeks ago
- Python Package for the downstream analysis of mass-spectrometry-based proteomics data☆80Updated last month
- What you need to process the Quarterly DepMap-Omics releases from Terra☆125Updated 4 months ago
- Examples of TMT data analyses using R. Links to notebooks and repositories. Also a few spectral counting analyses.☆22Updated 3 years ago
- The repo for LFQ-Analyst☆30Updated last year
- ☆67Updated last year
- A cross-platform proteomics data analysis suite☆272Updated this week
- Community-curated tutorials and datasets for ML in proteomics☆55Updated 2 months ago
- Python packaging for CPTAC data☆109Updated last year
- AlphaViz is a cutting-edge browser-based interactive visualization tool allowing to visualize the processed mass spectrometry data acquir…☆35Updated 9 months ago
- R-Shiny GUI integrated with the MSstats package family☆19Updated last week
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆50Updated this week
- Score an Affinity Purification Mass Spectrometry Proteomics Experiment for Interactor Confidence☆11Updated 10 years ago
- ☆24Updated 2 years ago
- Unified knowledge-driven network inference from omics data☆91Updated this week