RasmussenLab / pimmsLinks
Imputing proteomics data using deep learning models
☆30Updated last week
Alternatives and similar repositories for pimms
Users that are interested in pimms are comparing it to the libraries listed below
Sorting:
- This is a collection of minimal code to visualize various aspects of proteomics data.☆83Updated 3 years ago
- MS-DAP: downstream analysis pipeline for quantitative proteomics☆39Updated 8 months ago
- Report processing and protein quantification for MS-based proteomics☆49Updated 2 years ago
- Infrastructure of AlphaX ecosystem☆44Updated 2 weeks ago
- R package - MSstats☆86Updated last week
- Fast and accurate label-free quantification for small and very large numbers of proteomes☆60Updated 2 months ago
- Differential Expression Analysis tool box R lang package for omics data☆45Updated 2 weeks ago
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆59Updated 2 weeks ago
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆86Updated 2 months ago
- Mass spectrometry imaging toolbox☆64Updated 2 weeks ago
- Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics☆121Updated 3 months ago
- PDV: an integrative proteomics data viewer☆57Updated 3 months ago
- Repository for the Broad Institute Proteogenomic Data Analysis Center (PGDAC) established by the NIH Clinical Proteomics Tumor Analysis C…☆37Updated this week
- An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics☆31Updated last week
- Analysis of co-fractionation MS datasets☆13Updated 3 years ago
- Examples of TMT data analyses using R. Links to notebooks and repositories. Also a few spectral counting analyses.☆22Updated 3 years ago
- R-Shiny GUI integrated with the MSstats package family☆16Updated last week
- modular & open DIA search☆80Updated this week
- ☆66Updated last year
- 🧪 🖥 Transparent exploration of machine learning for biomarker discovery from proteomics and omics data☆37Updated last year
- The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets☆96Updated last month
- AlphaViz is a cutting-edge browser-based interactive visualization tool allowing to visualize the processed mass spectrometry data acquir…☆34Updated 6 months ago
- The repo for LFQ-Analyst☆30Updated last year
- A cross-platform proteomics data analysis suite☆261Updated this week
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆36Updated last year
- R-based package for detecting differentially abundant proteins in shotgun mass spectrometry-based proteomic experiments with tandem mass …☆29Updated 3 months ago
- PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering☆119Updated last month
- A list of tools on proteomics using deep learning☆106Updated last year
- ☆24Updated 2 years ago
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆48Updated this week