RasmussenLab / pimms
Imputing proteomics data using deep learning models
☆21Updated this week
Alternatives and similar repositories for pimms:
Users that are interested in pimms are comparing it to the libraries listed below
- Infrastructure of AlphaX ecosystem☆37Updated this week
- AlphaViz is a cutting-edge browser-based interactive visualization tool allowing to visualize the processed mass spectrometry data acquir…☆31Updated last week
- Python Package for the downstream analysis of mass-spectrometry-based proteomics data☆64Updated this week
- Fast and accurate label-free quantification for small and very large numbers of proteomes☆47Updated this week
- ☆58Updated 9 months ago
- This is a collection of minimal code to visualize various aspects of proteomics data.☆71Updated 3 years ago
- modular & open DIA search☆63Updated this week
- This project is created by the Hao Lab at the Chemistry Department in George Washington University, Washington, D.C. This project aims to…☆23Updated 3 months ago
- Report processing and protein quantification for MS-based proteomics☆39Updated last year
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆81Updated last week
- Proteomics search software with integrated calibration, PTM discovery, bottom-up, top-down and LFQ capabilities☆94Updated last week
- PDV: an integrative proteomics data viewer☆45Updated last month
- Deep learning framework for proteomics☆116Updated this week
- PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering☆115Updated 2 weeks ago
- bioinformatics plotting and tools☆55Updated 9 months ago
- Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics☆112Updated 8 months ago
- MS-DAP: downstream analysis pipeline for quantitative proteomics☆32Updated this week
- 🧪 🖥 Transparent exploration of machine learning for biomarker discovery from proteomics and omics data☆33Updated 8 months ago
- Differential Expression Analysis tool box R lang package for omics data☆44Updated 3 weeks ago
- The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets☆80Updated 4 months ago
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆37Updated this week
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆47Updated this week
- Repository for the Broad Institute Proteogenomic Data Analysis Center (PGDAC) established by the NIH Clinical Proteomics Tumor Analysis C…☆34Updated 2 weeks ago
- R package for functionally scoring phosphorylation sites☆19Updated 5 years ago
- Examples of TMT data analyses using R. Links to notebooks and repositories. Also a few spectral counting analyses.☆21Updated 2 years ago
- An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics☆27Updated this week
- Mass spectrometry imaging toolbox☆47Updated 2 months ago
- Score an Affinity Purification Mass Spectrometry Proteomics Experiment for Interactor Confidence☆10Updated 9 years ago
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆43Updated this week
- SCeptre is a python package that extends the functionalities of Scanpy to analyze multiplexed single-cell proteomics data.☆13Updated 11 months ago