Self-Supervised Vision Transformers for multiplexed imaging datasets
☆68Apr 23, 2026Updated 4 months ago
Alternatives and similar repositories for scDINO
Users that are interested in scDINO are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Label Free Prediction of Cell Painting from Brightfield Images☆36Jul 7, 2022Updated 4 years ago
- Official repo for Recursion's accepted spotlight paper at NeurIPS 2023 Generative AI & Biology workshop.☆79Jun 6, 2025Updated last year
- A flexible Julia toolkit for high-dimensional cellular profiles☆13Jul 14, 2023Updated 3 years ago
- Combining image-to-image and class guided denoising diffusion probabilistic models.☆55Mar 17, 2023Updated 3 years ago
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆110Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Python API and Jupyter widget for Vitessce☆67Aug 10, 2026Updated 2 weeks ago
- Codebase for training the SubCell models☆24Aug 24, 2026Updated last week
- Conditional Autoencoders for Multiplexed Pixel Analysis☆19Nov 25, 2022Updated 3 years ago
- Predicting Cell Health with Morphological Profiles☆41Jan 26, 2022Updated 4 years ago
- WS-DINO: a novel framework to use weak label information in a self-supervised setting to learn phenotypic representations from high-conte…☆24Mar 28, 2023Updated 3 years ago
- ☆11Jan 29, 2025Updated last year
- Next generation of SuRVoS☆10Oct 11, 2023Updated 2 years ago
- Lazily load multiscale whole-slide images with openslide and dask☆33Dec 6, 2022Updated 3 years ago
- Reproducible analyses for the NicheCompass manuscript☆14Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Bencharking pipeline for evaluating Transcriptomic representations for perturbation tasks☆16Nov 5, 2024Updated last year
- This repo will contain the code for training DINO models and extracting features☆17Aug 4, 2023Updated 3 years ago
- Morphological features from images and masks made easy.☆48Aug 19, 2026Updated last week
- Lists and 384-well plate maps of compounds and genetic perturbations designed to assess connectivity in profiling assays☆25Jan 3, 2025Updated last year
- A multi-dimensional spatial image data structure for scientific Python.☆44Aug 8, 2025Updated last year
- Laboratory for Fluorescence Dynamics (LFD) file formats.☆11Jun 24, 2026Updated 2 months ago
- Read Olympus image files (OIF and OIB).☆13Feb 9, 2026Updated 6 months ago
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆28Jan 3, 2025Updated last year
- ☆14Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Morphological profiling using deep learning☆129Aug 5, 2026Updated 3 weeks ago
- A Python package for single-cell spatial image analysis.☆18Aug 24, 2023Updated 3 years ago
- This repository contains the code, and access to the pretrained models and datasets for the paper: "Automated analysis of high-content mi…☆50Apr 30, 2017Updated 9 years ago
- Multiple-choice microscopy pipeline☆157Aug 3, 2026Updated 3 weeks ago
- Real-time, interactive exploration of 3D image stacks☆13Nov 25, 2019Updated 6 years ago
- A minimal dependency napari plugin giving access to scikit-image functions☆23Jul 6, 2026Updated last month
- A Python package using Gromov-Wasserstein distance to compare cell shapes☆26Jun 15, 2026Updated 2 months ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆36Updated this week
- PyFRAP: A Python based FRAP analysis tool box☆17Feb 1, 2026Updated 6 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆91Mar 19, 2026Updated 5 months ago
- Evaluating batch correction methods for image-based cell profiling☆15Aug 11, 2025Updated last year
- ☆11Apr 25, 2024Updated 2 years ago
- A fast, clean, responsive Hugo theme, now for academics.☆10May 20, 2026Updated 3 months ago
- Phenexplain source code☆15Oct 15, 2025Updated 10 months ago
- Python3 package for plotting Venn diagrams (up to 4 sets)☆27Jun 5, 2026Updated 2 months ago
- Read and write PicoQuant PTU and related files (PHU, PCK, PCO, PFS, PUS, PQRES, PQDAT, PQUNI, SPQR, and BIN).☆18Aug 9, 2026Updated 3 weeks ago