Self-Supervised Vision Transformers for multiplexed imaging datasets
☆60Jul 1, 2024Updated last year
Alternatives and similar repositories for scDINO
Users that are interested in scDINO are comparing it to the libraries listed below
Sorting:
- Codebase for training the SubCell models☆18Updated this week
- Official repo for Recursion's accepted spotlight paper at NeurIPS 2023 Generative AI & Biology workshop.☆73Jun 6, 2025Updated 9 months ago
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆106Updated this week
- Label Free Prediction of Cell Painting from Brightfield Images☆34Jul 7, 2022Updated 3 years ago
- A flexible Julia toolkit for high-dimensional cellular profiles☆13Jul 14, 2023Updated 2 years ago
- Combining image-to-image and class guided denoising diffusion probabilistic models.☆54Mar 17, 2023Updated 2 years ago
- A Python package using Gromov-Wasserstein distance to compare cell shapes☆22Jan 21, 2026Updated last month
- Python API and Jupyter widget for Vitessce☆62Feb 12, 2026Updated 3 weeks ago
- Predicting Cell Health with Morphological Profiles☆39Jan 26, 2022Updated 4 years ago
- ☆12Jan 29, 2025Updated last year
- ☆14Aug 14, 2023Updated 2 years ago
- Bencharking pipeline for evaluating Transcriptomic representations for perturbation tasks☆12Nov 5, 2024Updated last year
- Reproducible analyses for the NicheCompass manuscript☆13Jul 3, 2025Updated 8 months ago
- This repo will contain the code for training DINO models and extracting features☆14Aug 4, 2023Updated 2 years ago
- ☆11Apr 25, 2024Updated last year
- CHAMMI: A benchmark for channel-adaptive models in microscopy imaging☆14Oct 23, 2024Updated last year
- Morphological profiling using deep learning☆123Oct 19, 2024Updated last year
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆28Jan 3, 2025Updated last year
- ☆15Mar 25, 2016Updated 9 years ago
- This python module allows to extract data from the RAW-file-format produces by devices from Thermo Fisher Scientific.☆20Dec 30, 2024Updated last year
- Phenexplain source code☆14Oct 15, 2025Updated 4 months ago
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆155Feb 23, 2026Updated last week
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Feb 12, 2026Updated 3 weeks ago
- Compendium of tools for the Imaging Platform☆15Feb 22, 2026Updated last week
- All in one PDF Parser Toolkit☆16Sep 15, 2023Updated 2 years ago
- Evaluating batch correction methods for image-based cell profiling☆15Aug 11, 2025Updated 6 months ago
- ☆13Aug 9, 2022Updated 3 years ago
- Multiple-choice microscopy pipeline☆147Feb 27, 2026Updated last week
- ☆16Jun 22, 2022Updated 3 years ago
- Conditional Autoencoders for Multiplexed Pixel Analysis☆18Nov 25, 2022Updated 3 years ago
- rapids_singlecell: GPU-accelerated framework for scRNA analysis☆303Updated this week
- ☆21Feb 25, 2026Updated last week
- Gene Expression Decomposition and Integration☆19Feb 9, 2026Updated 3 weeks ago
- Multi-Scale Integrated Cell☆36Aug 11, 2022Updated 3 years ago
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆82Updated this week
- Derives consensus sequences from a set of long noisy reads by clustering and error correction.☆16Jul 20, 2021Updated 4 years ago
- A modular, efficient and portable tool for running parallel approximate Bayesian computation algorithms.☆18Feb 20, 2021Updated 5 years ago
- End-to-end PSF extraction for 3D microscopy☆16Jun 16, 2020Updated 5 years ago
- 3D segmentation for cells and organoids of 3D multichannel images☆30Jun 24, 2025Updated 8 months ago