JacobHanimann / scDINOLinks
Self-Supervised Vision Transformers for multiplexed imaging datasets
☆53Updated 11 months ago
Alternatives and similar repositories for scDINO
Users that are interested in scDINO are comparing it to the libraries listed below
Sorting:
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆30Updated 4 months ago
- Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications☆56Updated last year
- ☆50Updated 4 months ago
- ☆63Updated 4 months ago
- ☆23Updated 2 years ago
- ☆33Updated last year
- A foundation model framework for analyzing multiplexed tissue imaging data across molecular, cellular and tissue scales enabling clinical…☆31Updated 4 months ago
- Piecewise alignment for layers of mosaics☆25Updated last month
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆54Updated last month
- QuST: QuPath Extension for Integrative Whole Slide Image and Spatial Transcriptomics Analysis☆28Updated this week
- comseg☆21Updated 4 months ago
- Interactive visualization of spatial omics data☆59Updated 2 weeks ago
- Foundation Model for Multiplex Spatial Proteomic Images☆59Updated 3 weeks ago
- Label Free Prediction of Cell Painting from Brightfield Images☆30Updated 2 years ago
- ☆32Updated 2 years ago
- Sub-cellular spatial transcriptomics Cell Segmentation☆66Updated last year
- Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data☆43Updated 11 months ago
- Self-supervised models for encoding protein localization patterns from microscopy images☆76Updated 9 months ago
- Integrated pipeline for multiplexed image analysis☆90Updated 2 months ago
- ☆53Updated last week
- Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow☆26Updated 11 months ago
- multimodal whole slide image registration in a graph structure☆87Updated 11 months ago
- computer vision models for single-cell phenotyping☆51Updated this week
- Raw format to OME-TIFF converter☆53Updated 3 weeks ago
- MUSE is a deep learning approach characterizing tissue composition through combined analysis of morphologies and transcriptional states f…☆35Updated 3 years ago
- A pipeline to transform images into valuable analysis items☆13Updated last week
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆50Updated last week
- RAnking Markers for CEll Segmentation☆11Updated 3 years ago
- Accessible and interoperable whole slide image analysis☆94Updated last week
- Static plotting for spatialdata☆61Updated this week