MSBooster allows users to add deep learning-based features to .pin files before Percolator PSM rescoring
☆24Oct 7, 2026Updated 3 weeks ago
Alternatives and similar repositories for MSBooster
Users that are interested in MSBooster are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A label free quantification tool.☆20Jan 13, 2026Updated 9 months ago
- Repository for Deep Learning Models for Mass Spectrometry written in Rust☆18Oct 21, 2026Updated last week
- A reporting pipeline for visualization of immunopeptidomics MS data.☆15Nov 19, 2022Updated 3 years ago
- A diaPASEF spectrum-centric analysis tool☆14Mar 23, 2026Updated 7 months ago
- AutoRT: Peptide retention time prediction using deep learning☆32Jul 31, 2024Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆17Oct 22, 2026Updated last week
- A cross-platform proteomics data analysis suite☆327Updated this week
- Rebuilding QUILTS in Python.☆10Jul 14, 2024Updated 2 years ago
- Implementation of UniSpec, a deep learning model for predicting full fragment ion peptide spectra.☆13Feb 11, 2025Updated last year
- Semi-supervised learning for peptide identification from shotgun proteomics datasets☆144May 21, 2026Updated 5 months ago
- pDeepXL: MS/MS spectrum prediction for cross-linked peptide pairs by deep learning☆13Feb 8, 2021Updated 5 years ago
- Democratizing ML in proteomics☆57Sep 15, 2026Updated last month
- Deep learning framework for proteomics☆161Aug 31, 2026Updated last month
- Proteogenomics database-generation tool for protein haplotypes and variants☆13Jun 19, 2025Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆59Updated this week
- PDV: an integrative proteomics data viewer☆68Sep 22, 2026Updated last month
- De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model☆204Updated this week
- Paper collection about de novo peptide Sequening☆24Feb 5, 2025Updated last year
- Fast and flexible semi-supervised learning for peptide detection in Python☆52Sep 1, 2026Updated last month
- 🚀 Winner of the Donnelly Centre Innovation and Commercialization award: Apply diffusion models to deconvolute highly multiplexed DIA-MS/…☆13Apr 4, 2025Updated last year
- PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering☆131Oct 22, 2026Updated last week
- Estimation of false discovery proportion for mass spectrometry proteomics data using entrapment☆37Aug 22, 2026Updated 2 months ago
- An extension of the ProteoWizard framework enabling the support of the mzDB format☆14Feb 12, 2021Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- An open-source Python package to unify raw MS data accession and storage.☆36Aug 31, 2026Updated last month
- GenomeThreader gene prediction software.☆14Nov 10, 2025Updated 11 months ago
- High quality in silico spectral library generation for data-independent acquisition proteomics☆26Updated this week
- Proteomics search & quantification so fast that it feels like magic☆317Oct 22, 2026Updated last week
- MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …☆84Mar 26, 2026Updated 7 months ago
- Scalable, accurate and sensitive protein group FDRs for large-scale mass spectrometry experiments☆14Aug 20, 2026Updated 2 months ago
- R functions for automation of biomarker discovery based on processing downstream of large LC-MS datasets from any peak picking software☆10May 17, 2017Updated 9 years ago
- MS/MS prediction for peptides☆25Dec 18, 2020Updated 5 years ago
- PyCharm plugin to execute python code☆12Jul 29, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- An easy-to-use and interactive web application for FragPipe☆15Mar 8, 2026Updated 7 months ago
- MassDash: A web-based dashboard for streamlined DIA-MS visualization, analysis, prototyping, and optimization☆22Apr 28, 2026Updated 6 months ago
- Modular and user-friendly platform for AI-assisted rescoring of peptide identifications☆67Oct 9, 2026Updated 2 weeks ago
- [Nature Machine Intelligence], the first open de novo sequencing and open database search rescoring deep learning model.☆46May 30, 2026Updated 4 months ago
- Ultra-fast label-free quantification algorithm for mass-spectrometry proteomics☆26Oct 15, 2026Updated 2 weeks ago
- Repository for mzIdentML and the corresponding examples☆27Oct 19, 2026Updated last week
- ☆13May 10, 2021Updated 5 years ago