Alternatives and similar repositories for MSBooster:

Users that are interested in MSBooster are comparing it to the libraries listed below

• pFindStudio / pDeep3
  MS/MS prediction for peptides
  ☆22Updated 4 years ago
• grosenberger / easypqp
  EasyPQP: Simple library generation for OpenSWATH
  ☆11Updated last month
• Nesvilab / IonQuant
  A label free quantification tool.
  ☆16Updated 10 months ago
• bittremieux-lab / GLEAMS
  GLEAMS is a Learned Embedding for Annotating Mass Spectra.
  ☆24Updated last year
• MannLabs / structuremap
  Python package for investigating the structural context of PTMs
  ☆28Updated 3 months ago
• wfondrie / mokapot
  Fast and flexible semi-supervised learning for peptide detection in Python
  ☆43Updated last month
• smith-chem-wisc / FlashLFQ
  Ultra-fast label-free quantification algorithm for mass-spectrometry proteomics
  ☆20Updated 2 weeks ago
• Roestlab / massdash
  MassDash: A web-based dashboard for streamlined DIA-MS visualization, analysis, prototyping, and optimization
  ☆20Updated 3 weeks ago
• UWPR / Comet
  An tandem mass spectrometry (MS/MS) sequence database search tool.
  ☆48Updated last week
• wfondrie / ppx
  A Python interface to proteomics data repositories
  ☆34Updated last month
• MannLabs / alpharaw
  An open-source Python package to unify raw MS data accession and storage.
  ☆23Updated this week
• compomics / ms2pip
  MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.
  ☆42Updated last month
• MatteoLacki / timsr
  TimsR: Easy access to timsTOF Pro data from R.
  ☆10Updated 3 years ago
• statisticalbiotechnology / triqler
  The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code
  ☆22Updated 2 weeks ago
• lkytal / PepNet
  The state of the art Deep CNN neural network for de novo sequencing of tandem mass spectra
  ☆35Updated 5 months ago
• markmipt / ms1searchpy
  ☆10Updated last month
• Villen-Lab / pyAscore
  A python package for fast post translational modification localization, powered by Cython.
  ☆19Updated last year
• bzhanglab / PepQuery
  PepQuery: a targeted peptide search engine
  ☆11Updated 11 months ago
• IFIproteomics / LFQbench
  ☆24Updated 2 years ago
• jessegmeyerlab / proteomics-tutorial
  ☆58Updated 11 months ago
• gagneurlab / spectralis
  ☆13Updated 6 months ago
• bigbio / quantms
  Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…
  ☆42Updated last week
• PayneLab / ProteomicsEducation
  ☆29Updated 8 months ago
• InfectionMedicineProteomics / DPKS
  Data Processing Kitchen Sink for proteomics data
  ☆11Updated this week
• wenbostar / PDV
  PDV: an integrative proteomics data viewer
  ☆46Updated this week
• wilhelm-lab / koina
  Democratizing ML in proteomics
  ☆35Updated this week
• statisticalbiotechnology / diffacto
  ☆13Updated last year
• ZhuMSLab / DecoMetDIA
  ☆11Updated 2 years ago
• LiChenPU / NetID
  A global network optimization approach for untargeted LC-MS metabolomics data annotation and metabolite discovery
  ☆46Updated last year
• compomics / psm_utils
  Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python
  ☆27Updated this week