MSBooster allows users to add deep learning-based features to .pin files before Percolator PSM rescoring
☆22Jun 23, 2026Updated last week
Alternatives and similar repositories for MSBooster
Users that are interested in MSBooster are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A label free quantification tool.☆20Jan 13, 2026Updated 5 months ago
- Implementation of UniSpec, a deep learning model for predicting full fragment ion peptide spectra.☆12Feb 11, 2025Updated last year
- Proteogenomics database-generation tool for protein haplotypes and variants☆11Jun 19, 2025Updated last year
- Paper collection about de novo peptide Sequening☆24Feb 5, 2025Updated last year
- A cross-platform proteomics data analysis suite☆304Updated this week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Repository for Deep Learning Models for Mass Spectrometry written in Rust☆17Jun 2, 2026Updated 3 weeks ago
- Deep learning framework for proteomics☆154Jun 10, 2026Updated 2 weeks ago
- pDeepXL: MS/MS spectrum prediction for cross-linked peptide pairs by deep learning☆13Feb 8, 2021Updated 5 years ago
- De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model☆189Updated this week
- A diaPASEF spectrum-centric analysis tool☆14Mar 23, 2026Updated 3 months ago
- Semi-supervised learning for peptide identification from shotgun proteomics datasets☆142May 21, 2026Updated last month
- An easy-to-use and interactive web application for FragPipe☆14Mar 8, 2026Updated 3 months ago
- MS/MS prediction for peptides☆25Dec 18, 2020Updated 5 years ago
- A list of tools on proteomics using deep learning☆108May 14, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A reporting pipeline for visualization of immunopeptidomics MS data.☆16Nov 19, 2022Updated 3 years ago
- Ultra-fast label-free quantification algorithm for mass-spectrometry proteomics☆25Apr 8, 2026Updated 2 months ago
- PyCharm plugin to execute python code☆12Jul 29, 2025Updated 11 months ago
- RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control ana…☆71Jan 6, 2026Updated 5 months ago
- ☆31Jun 15, 2026Updated 2 weeks ago
- Fast and flexible semi-supervised learning for peptide detection in Python☆52Jun 19, 2026Updated last week
- ☆13May 10, 2021Updated 5 years ago
- An r package for proteomics data Analysis, developed from DEP.☆36Mar 21, 2025Updated last year
- Proteomics search & quantification so fast that it feels like magic☆297Jun 5, 2026Updated 3 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Support for Java, C#, Python☆17Dec 7, 2025Updated 6 months ago
- An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…☆96Jun 3, 2026Updated 3 weeks ago
- PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering☆128Apr 19, 2026Updated 2 months ago
- Computational analysis for mass spectrometry-based proteomics data☆11Apr 25, 2016Updated 10 years ago
- The repo for LFQ-Analyst☆31Aug 7, 2024Updated last year
- A point cloud based deep learning model for untargeted feature detection and quantification in profile LC-HRMS data☆28Aug 28, 2023Updated 2 years ago
- MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …☆83Mar 26, 2026Updated 3 months ago
- Automatically exported from code.google.com/p/kojak-ms☆13Apr 11, 2025Updated last year
- AlphaViz is a cutting-edge browser-based interactive visualization tool allowing to visualize the processed mass spectrometry data acquir…☆39Jun 3, 2026Updated 3 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- DL model to predict HLA peptide presentation☆16Jan 31, 2024Updated 2 years ago
- an efficient data integration method for multiple spatial transcriptomics data with non- cluster-relevant effects such as the complex batc…☆15Dec 15, 2025Updated 6 months ago
- A tool integrates channel abundances from multiple TMT samples and exports a general report for downstream analysis.☆14Apr 21, 2026Updated 2 months ago
- A Nextflow pipeline to align, merge, and organize large PhIP-Seq datasets☆13Feb 7, 2025Updated last year
- ☆70May 19, 2026Updated last month
- Modular and user-friendly platform for AI-assisted rescoring of peptide identifications☆66Apr 11, 2026Updated 2 months ago
- Python client for PRIDE Archive Rest API.☆40Jun 8, 2026Updated 3 weeks ago