Alternatives and similar repositories for MSBooster

Users that are interested in MSBooster are comparing it to the libraries listed below

• pFindStudio / pDeep3
  MS/MS prediction for peptides
  ☆23Updated 4 years ago
• Nesvilab / IonQuant
  A label free quantification tool.
  ☆17Updated 2 weeks ago
• grosenberger / easypqp
  EasyPQP: Simple library generation for OpenSWATH
  ☆11Updated 2 months ago
• bittremieux-lab / GLEAMS
  GLEAMS is a Learned Embedding for Annotating Mass Spectra.
  ☆25Updated last year
• LiChenPU / NetID
  A global network optimization approach for untargeted LC-MS metabolomics data annotation and metabolite discovery
  ☆46Updated last year
• wfondrie / ppx
  A Python interface to proteomics data repositories
  ☆34Updated 3 weeks ago
• PayneLab / ProteomicsEducation
  ☆33Updated this week
• xia-lab / OptiLCMS
  R package for optimized LC-MS spectra processing
  ☆25Updated 2 months ago
• InfectionMedicineProteomics / DPKS
  Data Processing Kitchen Sink for proteomics data
  ☆11Updated 2 months ago
• PRIDE-Archive / pridepy
  Python client for PRIDE Archive Rest API.
  ☆24Updated 3 months ago
• shuzhao-li / mummichog
  pathway and network analysis for metabolomics
  ☆41Updated last year
• wfondrie / mokapot
  Fast and flexible semi-supervised learning for peptide detection in Python
  ☆47Updated 4 months ago
• nf-core / metaboigniter
  Pre-processing of mass spectrometry-based metabolomics data with quantification and identification based on MS1 and MS2 data.
  ☆22Updated last month
• lkytal / PepNet
  The state of the art Deep CNN neural network for de novo sequencing of tandem mass spectra
  ☆36Updated 8 months ago
• MatteoLacki / timsr
  TimsR: Easy access to timsTOF Pro data from R.
  ☆10Updated 4 years ago
• jessegmeyerlab / proteomics-tutorial
  ☆62Updated last year
• CompOmics / ms2pip
  MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.
  ☆44Updated 4 months ago
• Noble-Lab / cascadia
  Transformer deep learning model for de novo sequencing of data-independent acquisition mass spectrometry data
  ☆19Updated 5 months ago
• Nesvilab / TMT-Integrator
  A tool integrates channel abundances from multiple TMT samples and exports a general report for downstream analysis.
  ☆12Updated 11 months ago
• zmahnoor14 / MAW
  Metabolome Annotation Workflow
  ☆25Updated last year
• MSGFPlus / msgfplus
  MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …
  ☆79Updated last year
• bigbio / quantms
  Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…
  ☆51Updated last month
• biocore / q2-qemistree
  Hierarchical orderings for mass spectrometry data. Canonically pronounced "chemis-tree".
  ☆31Updated 2 years ago
• bittremieux-lab / ANN-SoLo
  Spectral library searching using approximate nearest neighbor techniques.
  ☆43Updated 2 months ago
• evocellnet / funscoR
  R package for functionally scoring phosphorylation sites
  ☆20Updated 5 years ago
• IFIproteomics / LFQbench
  ☆24Updated 2 years ago
• tvpham / iq
  An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics
  ☆31Updated 4 months ago
• UWPR / Comet
  An tandem mass spectrometry (MS/MS) sequence database search tool.
  ☆51Updated 2 weeks ago
• MannLabs / structuremap
  Python package for investigating the structural context of PTMs
  ☆28Updated 6 months ago
• jaspershen / MetNormalizer
  MetNormalizer is used to normalize large scale metabolomics data.
  ☆22Updated 4 years ago