Search- and quantification-engine agnostic biological interpretation of proteomics data
☆37Sep 18, 2026Updated this week
Alternatives and similar repositories for alphapepttools
Users that are interested in alphapepttools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Dataloader for common proteomics search engine outputs into AnnData format☆14Mar 25, 2026Updated 5 months ago
- Read, create and write cutting data for the Leica LMD6 & LMD7 microscope. Build reproducible workflows to calibrate, import SVG files and…☆16Jul 15, 2026Updated 2 months ago
- Read/write functions to and from spatialdata for Deep Visual Proteomics☆20Sep 1, 2026Updated 2 weeks ago
- An AnnData-based framework for integrated proteomics analysis☆30Sep 7, 2026Updated last week
- Facilitating the use of Deep Visual Proteomics☆17Updated this week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Infrastructure of AlphaX ecosystem☆59Updated this week
- High quality in silico spectral library generation for data-independent acquisition proteomics☆23Aug 17, 2026Updated last month
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆113Updated this week
- A modern Python library for converting Mass Spectrometry Imaging (MSI) data into standardized SpatialData/Zarr format, enabling seamless …☆25Updated this week
- A Python package for unsupervised analysis of spatial (prote)omics data.☆19Jul 23, 2026Updated last month
- ☆28Sep 12, 2026Updated last week
- modular & open DIA search☆115Updated this week
- Interactive and integrated analysis of multiplexed tissue microarrays☆15Updated this week
- qpx (Quantitative Proteomics eXchange) format (aka quantms.io) a format to capture a full proteomics experiment☆26Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A multimodal, agentic AI framework that captures and shares practical expertise by linking written instructions to real-world laboratory …☆25Dec 2, 2025Updated 9 months ago
- Nextflow version of Sopa - spatial omics pipeline and analysis☆20Updated this week
- Configure Vitessce using existing Scverse plotting APIs☆25Aug 7, 2026Updated last month
- A library for QC report based on MultiQC framework☆34Updated this week
- ☆44Updated this week
- An open-source Python package to unify raw MS data accession and storage.☆35Aug 31, 2026Updated 2 weeks ago
- ☆17Sep 11, 2026Updated last week
- Deep learning framework for proteomics☆158Aug 31, 2026Updated 2 weeks ago
- A Rust library for peptide centric mass spec calculations centered around PSI standards and handling complex cases robustly☆51Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- An open-source Python package for accurate and sensitive peptide and protein quantification.☆21Aug 21, 2026Updated 3 weeks ago
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆81Aug 22, 2026Updated 3 weeks ago
- ☆38Sep 11, 2026Updated last week
- ☆17Jul 2, 2026Updated 2 months ago
- Fast and accurate label-free quantification for small and very large numbers of proteomes☆62Jul 15, 2026Updated 2 months ago
- Slides and Notebooks for scverse 2024☆16Sep 24, 2024Updated last year
- ☆12Mar 20, 2024Updated 2 years ago
- Genomic Features in Python from BioConductor's AnnotationHub☆22Updated this week
- Documentation for the limpa Bioconductor package, which implements quantification and differential analysis of mass-spectrometry proteomi…☆23Sep 7, 2026Updated last week
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆103Updated this week
- Multimodal Data (.h5mu) implementation for Python☆134Updated this week
- A user-friendly library that brings familiar DataFrame-style operations to AnnData objects with a simple and expressive API.☆18Aug 24, 2026Updated 3 weeks ago
- ☆40Feb 24, 2026Updated 6 months ago
- CLI toolkit for fast analysis of DIA proteomics experiments and in silico library prediction☆22Updated this week
- Democratizing ML in proteomics☆56Updated this week
- Single-cell spatial omics analysis that makes you happy!☆75Updated this week