Hydro3639 / NanoPhaseLinks
Reference-quality genome reconstruction from complex metagenomes (or bacterial isolates) using only Nanopore long reads or both long and short reads (hybrid strategy)
☆33Updated 2 years ago
Alternatives and similar repositories for NanoPhase
Users that are interested in NanoPhase are comparing it to the libraries listed below
Sorting:
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆49Updated 2 years ago
- Bioinformatics tool to find integrons in bacterial genomes☆82Updated 8 months ago
- Contains a fasta format database of a large variety of mobile genetic elements and an annotation file☆52Updated 4 years ago
- Insertion sequences (Insertion Element) [https://en.wikipedia.org/wiki/Insertion_sequence] collected from ISfinder (https://isfinder.biot…☆72Updated 5 years ago
- Horizontal gene transfer (HGT) identification pipeline☆65Updated 2 years ago
- Binning Virus Genomes from Metagenomes☆68Updated 3 years ago
- ☆33Updated 11 months ago
- ☆65Updated last year
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆82Updated 4 months ago
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆54Updated 2 months ago
- HMM-based identification and categorization of iron genes and iron gene operons in genomes and metagenomes☆66Updated 3 years ago
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆75Updated last year
- A pipeline for running AMRfinderPlus and collating results into functional classes☆90Updated last month
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆86Updated last year
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆83Updated 2 weeks ago
- PANgenome with Annotations, COre identification, Tree and corresponding Alignments☆80Updated 2 years ago
- ☆62Updated last year
- ☆56Updated 6 months ago
- Reorients assembled microbial sequences☆131Updated 5 months ago
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆146Updated last week
- code repo for mobileOG-db☆43Updated 2 months ago
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆101Updated last month
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆89Updated last year
- post processing of bacterial pangenome gene presence/absence matrices☆63Updated this week
- Lightweight bioinformatics pipeline for microbial genome recovery☆18Updated 2 months ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50Updated last year
- ARGs-OAP: Online Analysis Pipeline for Antibiotic Resistance Genes Detection from Metagenomic Data Using an Integrated Structured ARG Dat…☆70Updated 10 months ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆124Updated 2 years ago
- GenoVi, an automated customizable circular genome visualizer for bacteria and archaea☆101Updated 2 years ago
- Prediction of prophages from bacterial genomes☆81Updated 7 months ago