Alternatives and similar repositories for NanoPhase

Users that are interested in NanoPhase are comparing it to the libraries listed below

• allind / EukDetect
  ☆56Updated 5 months ago
• nekokoe / Plasmer
  An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.
  ☆49Updated 2 years ago
• chengsly / DeepMicroClass
  ☆31Updated 10 months ago
• patrickwest / EukRep
  Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets
  ☆75Updated last year
• ziyewang / COMEBin
  ☆64Updated last year
• gbouras13 / hybracter
  Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.
  ☆146Updated last week
• thanhleviet / ISfinder-sequences
  Insertion sequences (Insertion Element) [https://en.wikipedia.org/wiki/Insertion_sequence] collected from ISfinder (https://isfinder.biot…
  ☆72Updated 5 years ago
• AnantharamanLab / vRhyme
  Binning Virus Genomes from Metagenomes
  ☆68Updated 3 years ago
• KatariinaParnanen / MobileGeneticElementDatabase
  Contains a fasta format database of a large variety of mobile genetic elements and an annotation file
  ☆52Updated 4 years ago
• gem-pasteur / Integron_Finder
  Bioinformatics tool to find integrons in bacterial genomes
  ☆83Updated 7 months ago
• Serka-M / mmlong2
  Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes
  ☆55Updated 2 months ago
• MDU-PHL / abritamr
  A pipeline for running AMRfinderPlus and collating results into functional classes
  ☆90Updated 3 weeks ago
• gbouras13 / dnaapler
  Reorients assembled microbial sequences
  ☆131Updated 4 months ago
• songweizhi / MetaCHIP
  Horizontal gene transfer (HGT) identification pipeline
  ☆65Updated 2 years ago
• adlape95 / Assembly-methods-nanopore
  Assembly methods for nanopore-based metagenomic sequencing: a comparative study
  ☆18Updated 5 years ago
• xiezhq / ISEScan
  A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome
  ☆100Updated 3 weeks ago
• linxingchen / cobra
  A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…
  ☆82Updated 3 months ago
• gtonkinhill / panstripe
  post processing of bacterial pangenome gene presence/absence matrices
  ☆63Updated 10 months ago
• gbouras13 / plassembler
  Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates
  ☆83Updated this week
• Alan-Collins / CRISPR_comparison_toolkit
  Tools to analyze the differences and similarities between CRISPR arrays
  ☆11Updated last year
• aldertzomer / RFPlasmid
  Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf
  ☆50Updated last year
• bhattlab / MGEfinder
  A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.
  ☆124Updated 2 years ago
• ziyewang / MetaBinner
  ☆61Updated last year
• AnantharamanLab / ViWrap
  A wrapper to identify, bin, classify, and predict host-viral relationship for viruses
  ☆83Updated last year
• Serka-M / mmlong2-lite
  Lightweight bioinformatics pipeline for microbial genome recovery
  ☆18Updated 2 months ago
• patrickwest / EukRep_Pipeline
  ☆24Updated 7 years ago
• HubertTang / PLASMe
  ☆32Updated last year
• gem-pasteur / PanACoTA
  PANgenome with Annotations, COre identification, Tree and corresponding Alignments
  ☆76Updated 2 years ago
• Arkadiy-Garber / FeGenie
  HMM-based identification and categorization of iron genes and iron gene operons in genomes and metagenomes
  ☆66Updated 3 years ago
• EBI-Metagenomics / EukCC
  Tool to estimate genome quality of microbial eukaryotes
  ☆38Updated 4 months ago