Hydro3639 / NanoPhase
Reference-quality genome reconstruction from complex metagenomes (or bacterial isolates) using only Nanopore long reads or both long and short reads (hybrid strategy)
☆25Updated last year
Related projects ⓘ
Alternatives and complementary repositories for NanoPhase
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆48Updated 3 weeks ago
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆40Updated last year
- Horizontal gene transfer (HGT) identification pipeline☆56Updated last year
- Insertion sequences (Insertion Element) [https://en.wikipedia.org/wiki/Insertion_sequence] collected from ISfinder (https://isfinder.biot…☆60Updated 4 years ago
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆39Updated 3 months ago
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆67Updated last month
- EzAAI - High Throughput Prokaryotic AAI Calculator☆36Updated 3 weeks ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆50Updated 6 months ago
- Contains a fasta format database of a large variety of mobile genetic elements and an annotation file☆39Updated 3 years ago
- Binning Virus Genomes from Metagenomes☆58Updated 2 years ago
- Downstream processing of VAMB binning for Viral Elucidation☆46Updated 4 months ago
- ☆37Updated 8 months ago
- ☆48Updated 8 months ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆48Updated 6 months ago
- a collection of scripts for organising bacterial genomes by species☆76Updated 2 years ago
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆60Updated 3 months ago
- A tool for removing redundant genomes from a set of assemblies☆68Updated last year
- Prediction of prophages from bacterial genomes☆70Updated 11 months ago
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆63Updated 2 weeks ago
- A toolbox for comparative genomics.☆97Updated 3 years ago
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆84Updated 11 months ago
- ☆26Updated 10 months ago
- MetaCompare☆17Updated 8 months ago
- code repo for mobileOG-db☆32Updated 4 months ago
- Assembly methods for nanopore-based metagenomic sequencing: a comparative study☆18Updated 4 years ago
- A pipeline for running AMRfinderPlus and collating results into functional classes☆71Updated 2 months ago
- A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category☆55Updated last month
- ☆46Updated 3 years ago
- post processing of bacterial pangenome gene presence/absence matrices☆51Updated 2 months ago
- Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2☆27Updated 4 years ago