MBoemo / DNAscentLinks
Software for detecting regions of BrdU and EdU incorporation in Oxford Nanopore reads.
☆35Updated 3 months ago
Alternatives and similar repositories for DNAscent
Users that are interested in DNAscent are comparing it to the libraries listed below
Sorting:
- Visualise and analyse nanopore (ONT) raw signals☆128Updated last month
- ☆52Updated 4 months ago
- Set of tools to manipulate and visualize modified base bam files☆59Updated 3 years ago
- A local-haplotagging-based small and structural variant caller☆94Updated 3 weeks ago
- Fast and accurate coordinate conversion between assemblies☆118Updated 3 months ago
- Pipeline to convert a haploid assembly into diploid☆111Updated last year
- Structural variant caller for real-time long-read sequencing data☆61Updated 3 years ago
- Wally: Visualization of aligned sequencing reads and contigs☆121Updated 4 months ago
- ☆83Updated last year
- Research release basecalling models and configurations☆117Updated 8 months ago
- Simple pileup-based variant caller☆95Updated 9 months ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆120Updated 2 months ago
- Call select base modifications in PacBio HiFi reads☆15Updated 2 months ago
- Methylation Phasing for Nanopore Sequencing☆49Updated 2 years ago
- Error correction of ONT transcript reads☆58Updated 2 years ago
- Splitting of sequence reads by internal adapter sequence search☆51Updated 2 years ago
- Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing☆60Updated last year
- ☆68Updated last week
- Copy number caller for long read data including SNV utilization☆68Updated 10 months ago
- RNA modifications detection from Nanopore dRNA-Seq data☆88Updated 3 weeks ago
- GUI for inspecting POD5 files☆34Updated last year
- Toolkit for calling structural variants using short or long reads☆115Updated last week
- Tools for fiberseq data written in rust.☆63Updated this week
- Mapping pipeline for data generated using Arima-HiC☆81Updated last year
- GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…☆70Updated 3 years ago
- Tools to annotate genomes using long read transcriptomics data☆45Updated 5 years ago
- Same species annotation lift over pipeline.☆97Updated 2 years ago
- Collection of tools for the analysis of CpG data☆105Updated 6 months ago
- A program for assessing the T2T genome continuity☆92Updated last month
- Phased assembly variant caller☆132Updated last year