Alternatives and similar repositories for DNAscent:

Users that are interested in DNAscent are comparing it to the libraries listed below

• wurmlab / flo
  Same species annotation lift over pipeline.
  ☆96Updated last year
• KolmogorovLab / hapdup
  Pipeline to convert a haploid assembly into diploid
  ☆94Updated 7 months ago
• PacificBiosciences / trgt
  Tandem repeat genotyping and visualization from PacBio HiFi data
  ☆113Updated last month
• epi2me-labs / wf-basecalling
  ☆36Updated last month
• epi2me-labs / modbam2bed
  ☆48Updated 4 months ago
• nanoporetech / pychopper
  A tool to identify, orient, trim and rescue full length cDNA reads
  ☆81Updated 2 years ago
• milkschen / leviosam2
  Fast and accurate coordinate conversion between assemblies
  ☆112Updated 3 months ago
• lh3 / minipileup
  Simple pileup-based variant caller
  ☆85Updated 9 months ago
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆110Updated 3 weeks ago
• nanoporetech / pinfish
  Tools to annotate genomes using long read transcriptomics data
  ☆45Updated 4 years ago
• CshlSiepelLab / phast
  PHAST
  ☆71Updated last month
• hiruna72 / squigualiser
  Visualise and analyse nanopore (ONT) raw signals
  ☆111Updated 3 weeks ago
• bergmanlab / mcclintock
  Meta-pipeline to identify transposable element insertions using next generation sequencing data
  ☆95Updated last year
• ksahlin / isONcorrect
  Error correction of ONT transcript reads
  ☆58Updated last year
• giesselmann / nanopype
  Snakemake pipelines for nanopore sequencing data archiving and processing
  ☆88Updated 2 years ago
• nanoporetech / rerio
  Research release basecalling models and configurations
  ☆104Updated 7 months ago
• nanoporetech / duplex-tools
  Splitting of sequence reads by internal adapter sequence search
  ☆51Updated last year
• kjenike / panagram
  ☆61Updated last week
• mrvollger / StainedGlass
  Make colorful identity heatmaps of genomic sequence
  ☆109Updated 7 months ago
• PacificBiosciences / jasmine
  Predict 5mC in PacBio HiFi reads
  ☆36Updated this week
• PacificBiosciences / pb-CpG-tools
  Collection of tools for the analysis of CpG data
  ☆75Updated 10 months ago
• Gaius-Augustus / TSEBRA
  TSEBRA: Transcript Selector for BRAKER
  ☆47Updated 2 months ago
• Kuanhao-Chao / LiftOn
  🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies
  ☆70Updated last month
• colindaven / awesome-pangenomes
  A list of software for pangenomics
  ☆93Updated last week
• informationsea / transanno
  accurate LiftOver tool for new genome assemblies
  ☆118Updated 5 months ago
• eblerjana / pangenie
  Pangenome-based genome inference
  ☆121Updated this week
• vahidAK / NanoMethPhase
  Methylation Phasing for Nanopore Sequencing
  ☆45Updated last year
• Dfam-consortium / TETools
  Dfam Transposable Element Tools Docker container.
  ☆87Updated last month
• nanoporetech / read_until_api
  Read Until client library for Nanopore Sequencing
  ☆103Updated 3 months ago