Software for detecting regions of BrdU and EdU incorporation in Oxford Nanopore reads.
☆43Jun 26, 2026Updated last week
Alternatives and similar repositories for DNAscent
Users that are interested in DNAscent are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Bam Read Index - Extract alignments from a bam file by readname☆29Apr 22, 2024Updated 2 years ago
- ☆14Apr 29, 2024Updated 2 years ago
- G4Hunter (2012_2015)- IECB - Bordeaux☆18Apr 7, 2020Updated 6 years ago
- snapper☆14Jul 8, 2024Updated last year
- A lightweight library for working with PAF (Pairwise mApping Format) files☆30May 25, 2026Updated last month
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- NanoMod: a computational tool to detect DNA modifications using Nanopore long-read sequencing data☆38Feb 2, 2022Updated 4 years ago
- Embedding-based indexing for compact storage and rapid querying of bacterial pan-genomes☆22Jun 9, 2026Updated 3 weeks ago
- DeepEdit: single-molecule detection and phasing of A-to-I RNA editing events using Nanopore direct RNA sequencing☆17Jun 4, 2023Updated 3 years ago
- An integrated computational framework for comprehensive transcriptome analyses with Nanopore direct-RNA sequencing data☆15May 17, 2025Updated last year
- Plasmid analysis using rearrangement distances☆56May 28, 2026Updated last month
- A method for measuring allele-specific telomere length and characterizing telomere variant repeat sequences from long reads.☆33Feb 5, 2026Updated 5 months ago
- A fully convolutional architecture for basecalling nanopore RNA sequencing data☆11Sep 26, 2024Updated last year
- ☆13Nov 15, 2017Updated 8 years ago
- Prediction of RNA modifications and their stoichiometry from per-read features: current intensity, dwell time and trace (Begik*, Lucas* e…☆25Dec 21, 2022Updated 3 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- GPU CRF-CTC decoding for nanopore basecalling☆15Jun 24, 2026Updated last week
- An R package for finding non-adenosine residues in poly(A) tails of ONT direct RNA sequencing reads☆16Jun 26, 2026Updated last week
- RNA modifications detection from Nanopore dRNA-Seq data☆88Jun 20, 2026Updated 2 weeks ago
- Hardware Accelerated Read Until☆18Sep 30, 2025Updated 9 months ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆42Sep 17, 2025Updated 9 months ago
- Nanopore raw signal segmentation and RNA modification estimation.☆13Mar 3, 2026Updated 4 months ago
- A Rust-based library for phylogenetic analysis and manipulation☆20Jun 26, 2026Updated last week
- Signal based nanopore RNA demultiplexing with convolutional neural networks☆39Aug 2, 2024Updated last year
- Yet another nanopore modification comparison tool☆12Mar 4, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Code accompanying "Direct detection of RNA modifications and structure using single molecule nanopore sequencing"☆13Sep 29, 2021Updated 4 years ago
- Nanomotif - a tool for identifying methylated motifs in metagenomic samples☆36Apr 10, 2026Updated 2 months ago
- Just Another JAva Package for Sequence Analysis☆24Dec 2, 2022Updated 3 years ago
- A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM …☆195Updated this week
- R integration for edlib, a C/C++ library for pairwise sequence alignment using edit distance (Levenshtein distance).☆11Jul 20, 2025Updated 11 months ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆37Feb 26, 2023Updated 3 years ago
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆63Nov 21, 2024Updated last year
- Basecalling configuration prediction through FASTQ files☆33Mar 17, 2026Updated 3 months ago
- BSMN common data processing pipeline☆11Jun 6, 2025Updated last year
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- LRSDAY: Long-read Sequencing Data Analysis for Yeasts☆34Feb 25, 2026Updated 4 months ago
- Nanopore raw signal repeat detection pipeline☆45Mar 17, 2023Updated 3 years ago
- direct RNA nanopore sequencing barcode design and demultiplexing☆20Apr 26, 2026Updated 2 months ago
- This repository contains the code developed for the NanOlympicsMod project.☆12Jan 29, 2024Updated 2 years ago
- a signal-level demultiplexer for Oxford Nanopore reads☆126Jan 18, 2021Updated 5 years ago
- lossless nanopore pod5 <=> s/blow5 file conversion☆48Apr 30, 2026Updated 2 months ago
- ☆30Dec 22, 2023Updated 2 years ago