MBoemo / DNAscentLinks
Software for detecting regions of BrdU and EdU incorporation in Oxford Nanopore reads.
☆32Updated last month
Alternatives and similar repositories for DNAscent
Users that are interested in DNAscent are comparing it to the libraries listed below
Sorting:
- Visualise and analyse nanopore (ONT) raw signals☆121Updated last month
- ☆76Updated 9 months ago
- Pipeline to convert a haploid assembly into diploid☆103Updated 8 months ago
- Wally: Visualization of aligned sequencing reads and contigs☆118Updated 5 months ago
- ☆49Updated last week
- Research release basecalling models and configurations☆114Updated 4 months ago
- A local-haplotagging-based small and structural variant caller☆85Updated this week
- Splitting of sequence reads by internal adapter sequence search☆51Updated 2 years ago
- Read Until client library for Nanopore Sequencing☆104Updated last year
- Set of tools to manipulate and visualize modified base bam files☆56Updated 3 years ago
- A list of software for pangenomics☆131Updated 2 weeks ago
- SquiggleKit: A toolkit for manipulating nanopore signal data☆127Updated last year
- RNA modifications detection from Nanopore dRNA-Seq data☆87Updated 3 weeks ago
- Fast and accurate coordinate conversion between assemblies☆116Updated 2 weeks ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆112Updated 2 months ago
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆111Updated last month
- Methylation Phasing for Nanopore Sequencing☆48Updated 2 years ago
- PBSIM3: a simulator for all types of PacBio and ONT long reads☆83Updated 5 months ago
- Collection of tools for the analysis of CpG data☆95Updated 3 months ago
- Hybrid error correction of long reads using colored de Bruijn graphs☆104Updated last month
- Simple pileup-based variant caller☆92Updated 5 months ago
- ☆79Updated 4 years ago
- ☆66Updated last month
- ☆46Updated last week
- Copy number caller for long read data including SNV utilization☆67Updated 6 months ago
- Flip-flop basecaller for Oxford Nanopore reads☆100Updated 3 years ago
- ☆117Updated last month
- Phased assembly variant caller☆126Updated 10 months ago
- Toolkit for calling structural variants using short or long reads☆109Updated 2 weeks ago
- A tool to identify, orient, trim and rescue full length cDNA reads☆82Updated 3 years ago