Scripts to run several protocols to process and analyze Next-Generation Sequencing data
☆18Aug 3, 2023Updated 2 years ago
Alternatives and similar repositories for ngs-protocols
Users that are interested in ngs-protocols are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- satMiner: A Toolkit to NGS satellite DNA mining and analysis☆12Mar 10, 2022Updated 4 years ago
- Collection of notes and scripts related to NGS☆14Feb 18, 2026Updated 2 months ago
- Simple and quick FastQ and FastA tool for file reading and conversion☆17Jul 11, 2014Updated 11 years ago
- Pipelines for NGS data preprocessing by the Bock lab and friends☆22Aug 29, 2022Updated 3 years ago
- Tetemer, an R package and Shiny app for interactively fitting population parameters to k-mer spectra of diploids, triploids, and tetraplo…☆15Apr 8, 2026Updated last week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- CRISPR NGS data analysis and visualization pipeline☆16Jul 26, 2019Updated 6 years ago
- ☆16Apr 9, 2021Updated 5 years ago
- An Example of Subgenome Phasing for Complex Allopolyploidy☆15Nov 6, 2025Updated 5 months ago
- material related to the genetech courses☆10Sep 11, 2023Updated 2 years ago
- A program for the Maximum-likelihood analysis of population genomic data.☆30Apr 1, 2021Updated 5 years ago
- Workflows written in common workflow language (CWL)☆14Dec 15, 2018Updated 7 years ago
- Workflow management system written as a pure Python package and command-line utility. It supports complex workflows modeled as directed- …☆17Mar 20, 2026Updated 3 weeks ago
- Scripts for Shi et al. (2024). The suer-pangenome of Populus unveils genomic facets for its adaptation and diversification in widespread …☆18Apr 1, 2024Updated 2 years ago
- A range of different perl scripts for manipulating sequences, conducting alignments, consensus sequences, changing formats☆28Dec 15, 2025Updated 4 months ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Python deployment tool for bespoke image curation projects, oriented toward scientific projects. Please cite https://academic.oup.com/gig…☆14Aug 6, 2022Updated 3 years ago
- GLASS consortium☆14May 31, 2022Updated 3 years ago
- small scripts, functions or bits of code for parsing genomic data☆14Sep 24, 2022Updated 3 years ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆35Jul 27, 2023Updated 2 years ago
- NGS DNA best practice pipeline for Illumina sequencing - alignment, variant calling, annotation and QC☆18Aug 22, 2025Updated 7 months ago
- Convert VCF (Variant Call Format) into TCGA MAF (Mutation Annotation Format)☆15Jul 15, 2016Updated 9 years ago
- DSDE Deep Learning Club☆40Mar 28, 2019Updated 7 years ago
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Aug 23, 2018Updated 7 years ago
- Biomark Fluidigm qPCR data set: processing and analysis☆11Apr 8, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- An R HTMLWidget for making interactive manhattan plots for GWAS.☆20Aug 1, 2015Updated 10 years ago
- Scripts☆10Jun 29, 2016Updated 9 years ago
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆16Apr 2, 2024Updated 2 years ago
- Jetstream compatible workflow template supporting comprehensive analysis of human sequencing data against GRCh38☆17May 20, 2024Updated last year
- Pipelines for NGS, imputation, gwas, ...☆29Dec 18, 2019Updated 6 years ago
- Modular Genome Assembly, Annotation and Assessment Pipeline☆21Mar 16, 2026Updated last month
- ☆46Nov 6, 2022Updated 3 years ago
- Transposable element expression at unique loci in single cells with CELLO-seq☆11Jun 17, 2024Updated last year
- chemmodlab: A Cheminformatics Modeling Laboratory for Fitting and Assessing Machine Learning Models☆17Nov 20, 2025Updated 4 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- A viewer for multiple alignment format (MAF) files in JBrowse 2☆14Updated this week
- R package for comparison of synteny conservation at the genome-wide scale.☆15Jun 6, 2024Updated last year
- Анализ данных и статистика в R☆18Mar 20, 2026Updated 3 weeks ago
- findGSE is a tool for estimating size of (heterozygous diploid or homozygous) genomes by fitting k-mer frequencies iteratively with a ske…☆38Jan 16, 2024Updated 2 years ago
- ActiveDriverDB☆12May 1, 2023Updated 2 years ago
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆15Feb 27, 2019Updated 7 years ago
- scripts for analysis associated with Cas9Enrichment publication☆12Feb 10, 2020Updated 6 years ago