fjruizruano / ngs-protocolsLinks
Scripts to run several protocols to process and analyze Next-Generation Sequencing data
☆17Updated 2 years ago
Alternatives and similar repositories for ngs-protocols
Users that are interested in ngs-protocols are comparing it to the libraries listed below
Sorting:
- Pipelines and tools for the processing of ancient and modern HTS data.☆47Updated 2 weeks ago
- De novo annotation of young retrotransposons☆48Updated 3 years ago
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 9 years ago
- My collection of light bioinformatics analysis pipelines for specific tasks☆76Updated last year
- perSVade: personalized Structural Variation detection☆40Updated 2 months ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆59Updated 2 years ago
- Transposable element polymorphism identification☆34Updated 5 years ago
- Scripts to calculate population genetics statistics☆55Updated 7 years ago
- A set of workflows written in Nextflow for Genome Annotation.☆46Updated last year
- Analysis of convergence between organismal traits and DNA/protein sequences☆59Updated this week
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- ☆30Updated 4 years ago
- A range of different perl scripts for manipulating sequences, conducting alignments, consensus sequences, changing formats☆30Updated 2 years ago
- An Efficient Swiss Army Knife for Population Genomic Analyses in R☆38Updated last year
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆35Updated last year
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆57Updated 2 years ago
- my bin directory☆45Updated 2 months ago
- LRSDAY: Long-read Sequencing Data Analysis for Yeasts☆32Updated last year
- Structural variant caller☆55Updated 3 years ago
- Synteny Imager☆65Updated 3 weeks ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆52Updated 5 years ago
- k-mer learning materials☆80Updated 9 months ago
- methods for orphan gene prediction paper optimization☆25Updated 3 years ago
- Software for clustering de novo assembled transcripts and counting overlapping reads☆76Updated 3 years ago
- PHAST☆77Updated last week
- Converts a VCF file to a FASTA alignment provided a reference genome and a GFF file☆52Updated 4 months ago
- Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.☆29Updated 6 years ago
- ☆26Updated 9 months ago
- Repository of common bioinformatics scripts☆39Updated 4 years ago
- Materials for Spring 2021 Applied Genomics Course☆53Updated 4 years ago