Alternatives and similar repositories for ngs-protocols

Users that are interested in ngs-protocols are comparing it to the libraries listed below

• tanghaibao / bio-pipeline
  My collection of light bioinformatics analysis pipelines for specific tasks
  ☆78Updated last year
• sujaikumar / assemblage
  Tools for working with second gen assemblies, fasta sequences, etc
  ☆93Updated 9 years ago
• ISUgenomics / common_scripts
  my bin directory
  ☆45Updated 4 months ago
• clemgoub / dnaPipeTE
  dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…
  ☆59Updated 2 years ago
• CshlSiepelLab / phast
  PHAST
  ☆78Updated last week
• groupschoof / AHRD
  High throughput protein function annotation with Human Readable Description (HRDs) and Gene Ontology (GO) Terms.
  ☆67Updated 2 years ago
• NBISweden / pipelines-nextflow
  A set of workflows written in Nextflow for Genome Annotation.
  ☆46Updated last year
• Gabaldonlab / perSVade
  perSVade: personalized Structural Variation detection
  ☆40Updated 4 months ago
• wurmlab / flo
  Same species annotation lift over pipeline.
  ☆98Updated 2 years ago
• drostlab / LTRpred
  De novo annotation of young retrotransposons
  ☆48Updated 3 years ago
• MikkelSchubert / paleomix
  Pipelines and tools for the processing of ancient and modern HTS data.
  ☆48Updated this week
• ListerLab / TEPID
  Transposable element polymorphism identification
  ☆34Updated 5 years ago
• josephhughes / Sequence-manipulation
  A range of different perl scripts for manipulating sequences, conducting alignments, consensus sequences, changing formats
  ☆29Updated last month
• tanghaibao / allhic
  Genome scaffolding based on HiC data in heterozygous and high ploidy genomes
  ☆60Updated last year
• z0on / GO_MWU
  Rank-based Gene Ontology analysis of gene expression data
  ☆43Updated 3 years ago
• lfaino / LoReAn
  Long Reads Annotation pipeline
  ☆72Updated 3 years ago
• giesselmann / nanopype
  Snakemake pipelines for nanopore sequencing data archiving and processing
  ☆91Updated 3 years ago
• dwinter / pafr
  Read, manipulate and visualize 'Pairwise mApping Format' data in R
  ☆76Updated 4 years ago
• wdecoster / nano-snakemake
  A snakemake pipeline for SV analysis from nanopore genome sequencing
  ☆52Updated 5 years ago
• Sun-Yanbo / FasParser
  A Windows Graphical Platform for Batch Manipulation of Tremendous Amount of Sequence Data
  ☆30Updated 4 years ago
• sansubs / vcf2pop
  ☆29Updated last year
• abacus-gene / paml-tutorial
  paml documentation and tutorials
  ☆66Updated last week
• peterthorpe5 / public_scripts
  collection of bioinformatic scripts
  ☆31Updated last year
• enormandeau / go_enrichment
  Transcripts annotation and GO enrichment Fisher tests
  ☆27Updated 2 years ago
• tatumdmortimer / popgen-stats
  Scripts to calculate population genetics statistics
  ☆55Updated 7 years ago
• Oshlack / Corset
  Software for clustering de novo assembled transcripts and counting overlapping reads
  ☆76Updated 3 years ago
• josephryan / estimate_genome_size.pl
  Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish
  ☆57Updated 2 years ago
• yjx1217 / LRSDAY
  LRSDAY: Long-read Sequencing Data Analysis for Yeasts
  ☆34Updated last year
• Trinotate / Trinotate.github.io
  web documentation for Trinotate
  ☆48Updated 2 years ago
• santiagosnchez / vcf2fasta
  Converts a VCF file to a FASTA alignment provided a reference genome and a GFF file
  ☆52Updated last month